Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01876 ATGTCGAACGATTTCAGTGCATCAAAATGCAAAAACGTGTTACCACACGAGACCCCGGACCTAAAAGAGCACTACGTTGTGGGGGAGAAGGTGCTGGGAGAAGGACACTTGGCCACCACGTACGTGTGCACCCACAAGGAGACAGGGAAGACTTATGCGTGCAAAACCATCCCAAAGGCGAAGCTGGTGGGCCAAGAGGAGTACGATGATGTGTGGAGGGAGATTCGGATCGTGCACCATTTGTCGGAGCACCCCAACGTGGCGAGGGTACAGGGAAGCTATGAAGACAAGTTTGCGGTGTACCTTGTGATGGAGCTGTGTCGTGGGGGTGAGCTTTTCTATAGGATCACTCAGAAGGGGCATTACAGCGAACGAGAGGCTGCCAAGTTGATGAAGACCATTGTTGGGGTGGTGGAAGGGTGCCACGCTCTTGGGGTCATCCATAGGGATCTCAAGCCCGAGAATTTCTTGTTTGATACCCTTGCCAGTAATGCCACCATCAAGGTCATCGATTTTGGCTTCTCTGTCTTCTTTAAACCAGGACAAACCTTTAGTGATATAGTTGGATCATGCTACTACATGGCCCCAGAGGTGTTGCGCAAACAATCTGGACCAGAAGTGGATGTTTGGAGTGCTGGTGTTATTCTATACACATTACTGAGAGGGCTCCCACCTTTCTGGGCAAAATCCGAAGCAGCTATTTTCAAACAGATTTTGCATAGAGAGGTTGATTTTGCATCTGATCCGTGGCCAAGTATATCAGAAAGTGCTAAAGATTTGATAAAAAAGATGTTGGATAAGGACCCTAAGAAAAGAATTTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATAGTGTTGCCCCGGACAAACCTCTCGATCCTGCTGTTTTGACACGCCTAAAGCATTTCTCAACAATGAATAAACTTAAGAAGATGGCATTACGTGTCATTGCAGAAAGACTTTCAGAGGAGGAAATAGGTGGATTAAAAGAGCTATTTAAAATGATTGACGAAGACAATAGTGGGACAATCACTTTTCAGGAACTCAAAGATGGTTTGAAAAGTGTGGGATGTAATCTCGTGGAATCTGAAATTAAATCCCTTATGGATGCGGCTGATATAGACAGCAATGGAACAATAGACTACGGTGAATTTCTCGCAGCTACTCTGCACTTGAACAAGATGGAAAGAGAAGAGAATTTGGCTGCTGCTTTTGCCTATTTTGATAAAGATGGTAGTGGGTACATCACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTTGGCCTTGGTGTTTTGCATCTGGATGAGATGATCAAAGAGATTGATCAAGACAATTTTAACAATAAAATTGATGACATCACTTCAACTCGTTGTCTAAAAATTAGTGAAAGTGAAATATGTTTCTACTTTCTTGTTTCTCTTAGAAGTCAATCATCAGGATTAGTGACTGCATAA 1467 0.4376 MSNDFSASKCKNVLPHETPDLKEHYVVGEKVLGEGHLATTYVCTHKETGKTYACKTIPKAKLVGQEEYDDVWREIRIVHHLSEHPNVARVQGSYEDKFAVYLVMELCRGGELFYRITQKGHYSEREAAKLMKTIVGVVEGCHALGVIHRDLKPENFLFDTLASNATIKVIDFGFSVFFKPGQTFSDIVGSCYYMAPEVLRKQSGPEVDVWSAGVILYTLLRGLPPFWAKSEAAIFKQILHREVDFASDPWPSISESAKDLIKKMLDKDPKKRISAHEVLCHPWIVDDSVAPDKPLDPAVLTRLKHFSTMNKLKKMALRVIAERLSEEEIGGLKELFKMIDEDNSGTITFQELKDGLKSVGCNLVESEIKSLMDAADIDSNGTIDYGEFLAATLHLNKMEREENLAAAFAYFDKDGSGYITIDELQQACKDFGLGVLHLDEMIKEIDQDNFNNKIDDITSTRCLKISESEICFYFLVSLRSQSSGLVTA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01876 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Lapu7g01876 488 Pfam EF-hand domain 405 431 IPR002048 GO:0005509
Lapu7g01876 488 SMART efh_1 367 395 IPR002048 GO:0005509
Lapu7g01876 488 SMART efh_1 403 431 IPR002048 GO:0005509
Lapu7g01876 488 SMART efh_1 331 359 IPR002048 GO:0005509
Lapu7g01876 488 SUPERFAMILY EF-hand 323 454 IPR011992 -
Lapu7g01876 488 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Lapu7g01876 488 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
Lapu7g01876 488 CDD EFh 404 455 IPR002048 GO:0005509
Lapu7g01876 488 FunFam Calcium-dependent protein kinase 5 112 292 - -
Lapu7g01876 488 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Lapu7g01876 488 Gene3D Phosphorylase Kinase; domain 1 28 111 - -
Lapu7g01876 488 Pfam EF-hand domain pair 332 392 IPR002048 GO:0005509
Lapu7g01876 488 Gene3D Transferase(Phosphotransferase) domain 1 112 292 - -
Lapu7g01876 488 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01876 488 FunFam Aurora kinase A 19 110 - -
Lapu7g01876 488 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01876 488 ProSiteProfiles EF-hand calcium-binding domain profile. 327 362 IPR002048 GO:0005509
Lapu7g01876 488 CDD EFh 332 391 IPR002048 GO:0005509
Lapu7g01876 488 FunFam Calcium-dependent protein kinase 1 292 461 - -
Lapu7g01876 488 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 449 - -
Lapu7g01876 488 Gene3D - 293 461 - -
Lapu7g01876 488 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01876 488 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Lapu7g01876 488 SUPERFAMILY Protein kinase-like (PK-like) 15 309 IPR011009 -
Lapu7g01876 488 ProSitePatterns EF-hand calcium-binding domain. 340 352 IPR018247 -
Lapu7g01876 488 CDD STKc_CAMK 24 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01876 Lapu-Chr7 34733702 34738629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01876 12 455 EF-hand Containing Proteins AT4G09570 72.973 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu7g01876 Pkinase 1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01876 K13412 - gmx:100811596 816.994