Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01875 ATGCAGAAGCATGGTTCTTCATCCAAACGTAGCGTGCTACCGTATCAAACACCGAGACTAAGGGACCACTACGTTCTGGGGAAGAAGCTGGGACAGGGGCAATTTGGGACCACGTACCTGAGCACGCACAAGACGACGGGGAAGCTCTACGCATGCAAATCGATCCCGAAGAGGAAGCTTCTGTGTCAGGAGGATTATGATGACGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCGGAGCATCCCAATGTTGTTCAGATACAGGGAACGTACGAGGATTCTGTGTTCGTGCACCTTGTGATGGAGCTGTGTGCCGGGGGTGAGCTTTTTGACAGGATCATTCAGAAGGGGCATTATAGCGAGAGAGAGGCTGCAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCGTGCCACTCTCTTGGGGTCATGCATAGGGATCTCAAGCCAGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCCCAGATGAAGGCCACAGATTTTGGCCTCTCTGTCTTCTACAAGCCAGGACAATCCTTTCATGATGTAGTGGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGCAAGCAATATGGACCAGAAGTGGACGTATGGAGCGCTGGTGTAATCCTATACATCTTACTGAGTGGGGTGCCACCTTTCTGGGCTGAAAGTGAAGCAGGAATTTTTAGACAGATTTTAAACGGAGACCTTGATTTTGTTTCCGAGCCGTGGCCAAGTATCTCAGAAAGTGCTAAAGAATTGGTAAAACAGATGTTAGACAGGGACCCTAAGAAAAGAATTTCTGCTCATGAAGTTTTATGTCACCCTTGGATTGTTGATGATATTGCACCTGACAAACCTCTGGACTCTGCTGTTTTGACGCGCCTGAAGCATTTCTCAGCAATGAACAAGCTTAAGAAGATGGCATTACGAGTCATAGCAGAAAGACTTTCAGAGGAAGAAATAGGTGGATTGAAAGAGTTATTTAAAATGATTGACACAGATAGCAGTGGGACAATAACTTTTGAGGAACTCAAAGAGGGTTTGAGAAGTGTGGGCTCTAATCTCATGGAATCTGAAATCAAAGCCCTTATGGAAGCGGCTGATATTGATAACAGTGGAAGCATAGACTATGGTGAATTTCTTGCCGCTACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCTGCTTTTGCTTATTTTGATAAAGATGGAAGTGGTTACATCACCATTGATGAGCTTCAGCAGGCTAGCAAGGACTTTGGCCTTGGTGATGTACATCTGGATGAGATGATCAAAGAGATTGATCAAGACAATGATGGAAGAATTGATTATTCGGAGTTTACAGCAATGATGAAAAAGGGTGATCCGGATATTGATGATGGGAGAATTAATTATGGGGAGTTTAAATCTTTTGTACCGTTAGGAAACATGATGATAGAAGAAACTTTCTCGCCTCGCTCACCTCTCGCACCCCTTCCCAAGTCCTCAGAATCTGCCGTGGCCCAAACCGAAACAGAAACTGGTTCGACCGAGCCCGAAGCTGCCCAGATTGTCCCGGTTAAACCACCCTCATGGGAACCTGGTCTCTTCGCTGTCGTAATGATTGGTTCACGCCAATATATTGTTCACCCCGGGCGAAAGCTTGTTGTTCAGAGGTTGTCTGGTGCAAATGTTAATGATAAGATTGCCTTACATAAGGTTTTACTGGTTGGAACTGATACATCTTGCTACATTGGGAAACCAATAGTAACAAATGCTGTGGTGTATGCAACGGTAGAAGAGCAGGGTTTGGACCCCAAAGTAATTGTCTTCAAATATAAAAAGAAGAAACACTATCGCAGAACCATTGGACACAGACAGCCACATACACGTCTACGAATAAATAGCATTATGGGCTATGAGAACTACCCAAAAGTTACTATGGACGATATCAAATCGGAGGATTCCGAATCATGA 1980 0.4495 MQKHGSSSKRSVLPYQTPRLRDHYVLGKKLGQGQFGTTYLSTHKTTGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAAKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAQMKATDFGLSVFYKPGQSFHDVVGSPYYVAPEVLCKQYGPEVDVWSAGVILYILLSGVPPFWAESEAGIFRQILNGDLDFVSEPWPSISESAKELVKQMLDRDPKKRISAHEVLCHPWIVDDIAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFEELKEGLRSVGSNLMESEIKALMEAADIDNSGSIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQASKDFGLGDVHLDEMIKEIDQDNDGRIDYSEFTAMMKKGDPDIDDGRINYGEFKSFVPLGNMMIEETFSPRSPLAPLPKSSESAVAQTETETGSTEPEAAQIVPVKPPSWEPGLFAVVMIGSRQYIVHPGRKLVVQRLSGANVNDKIALHKVLLVGTDTSCYIGKPIVTNAVVYATVEEQGLDPKVIVFKYKKKKHYRRTIGHRQPHTRLRINSIMGYENYPKVTMDDIKSEDSES* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01875 659 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Lapu7g01875 659 CDD STKc_CAMK 23 281 - -
Lapu7g01875 659 CDD EFh 401 460 IPR002048 GO:0005509
Lapu7g01875 659 Gene3D - 306 465 - -
Lapu7g01875 659 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Lapu7g01875 659 FunFam Calcium-dependent protein kinase SK5 192 287 - -
Lapu7g01875 659 Gene3D Transferase(Phosphotransferase) domain 1 110 305 - -
Lapu7g01875 659 ProSitePatterns Ribosomal protein L21 signature. 609 631 IPR018258 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lapu7g01875 659 Gene3D Phosphorylase Kinase; domain 1 25 109 - -
Lapu7g01875 659 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Lapu7g01875 659 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509
Lapu7g01875 659 SUPERFAMILY L21p-like 537 638 IPR036164 -
Lapu7g01875 659 Pfam Ribosomal prokaryotic L21 protein 538 638 IPR028909 GO:0005840
Lapu7g01875 659 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Lapu7g01875 659 Pfam Protein kinase domain 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01875 659 CDD EFh 329 388 IPR002048 GO:0005509
Lapu7g01875 659 Hamap 50S ribosomal protein L21 [rplU]. 537 640 IPR001787 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lapu7g01875 659 MobiDBLite consensus disorder prediction 493 522 - -
Lapu7g01875 659 SUPERFAMILY Protein kinase-like (PK-like) 20 283 IPR011009 -
Lapu7g01875 659 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01875 659 SMART efh_1 400 428 IPR002048 GO:0005509
Lapu7g01875 659 SMART efh_1 434 462 IPR002048 GO:0005509
Lapu7g01875 659 SMART efh_1 328 356 IPR002048 GO:0005509
Lapu7g01875 659 SMART efh_1 364 392 IPR002048 GO:0005509
Lapu7g01875 659 ProSiteProfiles EF-hand calcium-binding domain profile. 434 465 IPR002048 GO:0005509
Lapu7g01875 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Lapu7g01875 659 NCBIfam 50S ribosomal protein L21 538 638 IPR001787 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lapu7g01875 659 FunFam Calcium-dependent protein kinase 1 289 463 - -
Lapu7g01875 659 MobiDBLite consensus disorder prediction 504 520 - -
Lapu7g01875 659 SUPERFAMILY EF-hand 305 463 IPR011992 -
Lapu7g01875 659 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Lapu7g01875 659 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Lapu7g01875 659 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 455 - -
Lapu7g01875 659 FunFam Calcium-dependent protein kinase 1 26 109 - -
Lapu7g01875 659 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01875 659 FunFam CDPK-related kinase 3 16 184 - -
Lapu7g01875 659 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Lapu7g01875 659 Pfam EF-hand domain pair 399 460 IPR002048 GO:0005509
Lapu7g01875 659 Pfam EF-hand domain pair 329 389 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01875 Lapu-Chr7 34728072 34745691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01875 11 463 EF-hand Containing Proteins AT1G35670 83.040 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu7g01875 Pkinase 1.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01875 K13412 - gmx:547887 909.827