Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01865 ATGGATCCAAAAGGAGGCTTTTGTGCTAATAACTGCACAATGTCCTCTTCCTTAGCCTCTCCTGGGAATGGATTGCAAACAAATTTGTCTTCAGATCCCCCCTCTTTCTATGGGCTCGGAATTGAATCTCCTTTCAATGAATTCAACCCGCCCTCTCCTCCAATTCAACCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGACCAAGAAAATTGTCCACAAAGTGACTCATCAAATACCAGTAAACTCCAAGATTGGAATCCAAGTGCAATGTTGAATAATCTTTCCTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATCTAGTTGTCAATAAAAAGTGCCAACCCTTTGGACAACCTCATGAACTAGTGACTCAGGAACAGCAACTCATCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGCAGTCTTCTCCCCTCTGTAAGGTACTGCCTCACTAACTCAAATCCCTTGGTTGGCGAGATTGACCAGCTTCGTGGGATTAACCTCCCTTTTGAATCAGAACCAAGTAGTGGTATTAGGCCACCAAATAATAGTGGAAATAACCTGTCTGATAAGTCCATTCTGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTACAACATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCTGGTTCCTATGAGATTTTACAGCTAGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCACATAAAGAAACCGGGTCTGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCATAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACACACTGTGACAAGAGCTATACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCATGTGGCACAACATTCTCAAGGAAAGACAAACTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGACGACACCAAAGGAGTGGCTGAGCTACCTGATCCCCAGAACAGAGAAAGCAGCAATAAGGTAGGGAGTGTGAACTTCTGTTTTGGATCAAAACCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATGTGAAAGGTAATATTGATGATCCTATGAATTATTTCTCATCGCTGAACTTCGAAGGCTCTAACTTTGGGGCGTTTAATGAATTCCCTCAAACTCCATTTGAAGATTCGGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGGTCCTAAATTTGGCGGCGAATCAAGTTCTGACAATCTGTAG 1536 0.4212 MDPKGGFCANNCTMSSSLASPGNGLQTNLSSDPPSFYGLGIESPFNEFNPPSPPIQPVLPGQSNTDVEIPDQENCPQSDSSNTSKLQDWNPSAMLNNLSFLEEKIHQLRDLVHLVVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRYCLTNSNPLVGEIDQLRGINLPFESEPSSGIRPPNNSGNNLSDKSILNDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVAELPDPQNRESSNKVGSVNFCFGSKPSSENVVQNMMDVKGNIDDPMNYFSSLNFEGSNFGAFNEFPQTPFEDSEGSFSFLMSGSFNYGPKFGGESSSDNL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01865 511 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Lapu7g01865 511 SMART c2h2final6 260 282 IPR013087 -
Lapu7g01865 511 SMART c2h2final6 347 369 IPR013087 -
Lapu7g01865 511 SMART c2h2final6 309 342 IPR013087 -
Lapu7g01865 511 Gene3D Classic Zinc Finger 244 314 - -
Lapu7g01865 511 MobiDBLite consensus disorder prediction 40 88 - -
Lapu7g01865 511 MobiDBLite consensus disorder prediction 189 208 - -
Lapu7g01865 511 MobiDBLite consensus disorder prediction 59 88 - -
Lapu7g01865 511 SUPERFAMILY beta-beta-alpha zinc fingers 258 285 IPR036236 -
Lapu7g01865 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Lapu7g01865 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 77 483 IPR044300 GO:0010044|GO:0010447
Lapu7g01865 511 MobiDBLite consensus disorder prediction 184 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01865 Lapu-Chr7 34649720 34653078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01865 228 509 C2H2 Transcription Factor Family AT1G34370 69.444 8.47e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g01865 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01865 - - gmx:100170687 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01865 7 34649720 34653078 Lapu7g01865 7 34649720 34653078 ECH