Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01828 ATGTTTAAGGTTATGGAAAACATGGAGAGGGGTTCAGAAAGATGCTTAGATTCTCAACTGTGGCATGCCTGTGCCGGTGCCATGGTTCAAATGCCTCCTCTTAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCGGAACACGCCCACGGGAAAGTAGATTTTGGCCAAAGCCGGGTTCCACCACTCGTCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTCAAAATGAGGCTGATCCCTTTGAGGGAACATGAATTGGATTTGGAGGATGATTGTTTCTTGGGGAACACTGGAATGGAGGGTCAAGAGAAACCTCCCACCTCTTTTGCGAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTGCCTCGTTACTGTGCAGAAACCATCTTCCCGAGGTTGGACTATTCAGCTGAGCCTCCAGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACGCCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGATTCTATTGTGTTTCTGAGGGCAGAAAACGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGTCTGAGTTCTCTTCTGGATGGAACCCTCTCTTTGGTGGGGGCTCTGGATTCTTGTGTGGGAGTGAGAGCAACTTGGTGGGTGGTGCGAAAGGTGGTGGTGACGAGATGGTGGGAAGAGTGGCTGCCGAATCTGTTGTTGAGGCTTTAGCTTGTGCTGTTAATGGCAGGCCCTTTGAGGTTGTGTACTATCCAAGAGCTAGTTCTCCAGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGAATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCATCTAGGATTAGCTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGTAGATCCCATTCGTTGGCCTGATTCTCCCTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTTCAGAATGTCAAGTGTGTAAACCCTTGGCTGGTTGAACTAGTCTCTAACATGCCGACCTTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGCTTCCTACATGACCCATATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTCTCAAGCAATCTTCTCAATTATACCAACTCTCTTTGTAATATTGAAAATAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTCCCCTTCAACAAGCTCCCAGCAGACATGCTTCTAGGTGGGTTCTCTAGGCTTGACCATGCAACAAAACCTATTAGGCCTCCTTGTGGAACCTATAAGAACAACACTACTAATACCACTACTAAGACCAATGTTGACATATCTTGCTTGTTGACTGTGGGAAATCCTAACCAGAATTTTAAGGAATCGAATGAAACAAAAGCTCCCCACATCTTGTTATTTGGAAAACTCATTCACACTGAGCAAAAGAGTTCAAACACTAGGTCTGGCAGTACAACTGGGAATAGTATGTCCGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGGCCTAGGTTCTGCTTTGCACCAAAATAGCCCAATTGAGAATAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAGCACAAGGCTGATCTTGGAACCGACAACGTTAACACGTTGTGTATTGCTTTGTGA 1824 0.4627 MFKVMENMERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQSRVPPLVPCRLSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNTGMEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGSEFSSGWNPLFGGGSGFLCGSESNLVGGAKGGGDEMVGRVAAESVVEALACAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVVDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLHDPYFQVINQLPMPSFSSNLLNYTNSLCNIENNSSAGIQGARHAQFGLSPSDFPFNKLPADMLLGGFSRLDHATKPIRPPCGTYKNNTTNTTTKTNVDISCLLTVGNPNQNFKESNETKAPHILLFGKLIHTEQKSSNTRSGSTTGNSMSEGNSLKTSNASDGLGSALHQNSPIENNSDGGSPWYKDQHKADLGTDNVNTLCIAL* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01828 607 SUPERFAMILY DNA-binding pseudobarrel domain 109 220 IPR015300 -
Lapu7g01828 607 FunFam Auxin response factor 313 386 - -
Lapu7g01828 607 Gene3D - 117 221 IPR015300 -
Lapu7g01828 607 MobiDBLite consensus disorder prediction 536 585 - -
Lapu7g01828 607 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Lapu7g01828 607 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 561 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu7g01828 607 FunFam Auxin response factor 117 221 - -
Lapu7g01828 607 MobiDBLite consensus disorder prediction 536 592 - -
Lapu7g01828 607 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Lapu7g01828 607 Gene3D - 313 386 - -
Lapu7g01828 607 CDD B3_DNA 118 219 IPR003340 GO:0003677
Lapu7g01828 607 SMART B3_2 119 221 IPR003340 GO:0003677
Lapu7g01828 607 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01828 Lapu-Chr7 34178890 34181823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01828 1 593 B3 DNA Binding Superfamily AT4G30080 56.739 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu7g01828 B3 2.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01828 - - ccaj:109810654 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01828 7 34178890 34181823 Lapu7g01828 7 34178890 34181823 ECH