Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01827 ATGGTTGGACCAAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCATATCGACGACCTTCTCGATTTTCCTGTCGAGGACGTTGAGGGCGGCGCCCCTACGTTGCCCTCCGTCGCCTCCGCCGCGGCCGGAAACTGCAACTCACTGGCAAGCATCTGGCCCGCCGAGTCAGACTCATTTCCCGGTTCTGACTCGGTATTTTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTGTCCAGTTAGAATGGCTGTCCAACTTTGTGGAGGATTCGTTTTGTGGGGGAAGCTTGACTATGAAGAAAGTGGAAGAGCCATCATGCACCACAAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTTCTTGCTCCGGGGGAAAGACGGTGCCGCCACCGCCACGCAGCCCGGAGGTTTACATCCCTGTGCCATGTGGACGTGCACGCAGCAAGCGTCCACGTCCTGCCACCTTCAATCCTCGCCCTGCCATGAACCTCATTTCCCCAGCCTCCTCCTTTGTTGGGGAGAACATGCCGCCAAACGTAATTTCCTCAAAGGCCTCTTCAGACTCTGAGAATTTTGTTGAGTCTCAACTTGTACCTAAGATGCCAAGGCAAACCTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGGTGACACTTCCTGCAGCTCCTGCTGATAGCAACCAGAATGCCTTGCAACCGGTTAGGAAATGCATGCATTGTGAAATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGACCAAAAACACTGTGCAATGCATGTGGTGTTCGTTTCAAGTCTGGCAGGCTCTACCCGGAGTATCGCCCTGCTGCAAGCCCAACTTTTTGTCCATCTTTGCACTCCAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGGGGCATTGACAAATCTGGTTTTGCAATGAATGCAGCTGCCTCTCCTGAGCTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1059 0.5279 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVEGGAPTLPSVASAAAGNCNSLASIWPAESDSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEEPSCTTKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPPPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMPPNVISSKASSDSENFVESQLVPKMPRQTSGEPKKKKKVKVTLPAAPADSNQNALQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIDKSGFAMNAAASPELIPNTNSSLTLEYM* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01827 352 PANTHER GATA TRANSCRIPTION FACTOR 16 321 - -
Lapu7g01827 352 CDD ZnF_GATA 257 304 IPR000679 GO:0006355|GO:0043565
Lapu7g01827 352 PIRSF Txn_fac_GATA_plant 3 345 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu7g01827 352 MobiDBLite consensus disorder prediction 135 248 - -
Lapu7g01827 352 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Lapu7g01827 352 SMART GATA_3 252 302 IPR000679 GO:0006355|GO:0043565
Lapu7g01827 352 MobiDBLite consensus disorder prediction 183 223 - -
Lapu7g01827 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 256 315 - -
Lapu7g01827 352 Pfam GATA zinc finger 258 291 IPR000679 GO:0006355|GO:0043565
Lapu7g01827 352 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Lapu7g01827 352 FunFam GATA transcription factor 247 335 - -
Lapu7g01827 352 Gene3D - 254 302 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01827 Lapu-Chr7 34153731 34157736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01827 19 320 C2C2-Gata Transcription Factor Family AT4G32890 36.774 7.68e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu7g01827 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01827 - - gmx:100815693 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01827 7 34153731 34157736 Lapu7g01827 7 34153731 34157736 ECH