Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01809 ATGGGTGGGAGCGAGAGCTCGAAGGGTGTGGTTTTGGGTCGTTTGGTTGAGTGCATCAAGGATATTTCTGGGTTGCCAGAGTGTCAGAACTTTTGCAAGAGGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTTTTGAGTCCTCTCTTTGAGGAATTAAAGGATAGTGATGAGTCCCTCAGCGATGAACAACTTGAGAGCTTTGAGTCTCTCTTGGTTGCTTTGGATTCAGCTAAGACCCTTTTAAAGGCTGTCAACCAAGGGAGCAAACTTTATCAGGCGTTGCGGAGGAATGATACAGCAGATAAATTCCAACAAGTAACTGAAAAAGTTGAAGCTGGGCTGAGTGAAATTCCTTATCACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTACATGCTCAATTCAAAAGAGCCAAGGCTCAAACAGAATTTGTTGATATACAACTTGACATAGATATGGCAATAGCACAAAAAGAAAAGGACCCTGATCCTGCTATACTCAAAAGACTTTCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAGTGGTGGAGAACTAGGAGACTCTTTTGAAATGATCACATCCCTTCTTAGCAAGCTGAGGGACTGTGTGCTAGCAGAAAATCCTGAAATCGACACAAGTGAATGTGAAAAATTAGTAGTTAAGCACCGGTCTCCTGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTTATTGTCTCTACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTCCATACAGCCCTTACCCCTAACTATGTTCTGAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGTATTGAGCTACCAAAGAAGCAAGGGAGTTGTAGAACAAAGAAATGTGGTGGAAGCAGTCATTCAGATTGTGATCGAACTGCTATTTGTGCCTTACTTGATAAACTGGCGAGTAACAATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCAGATAACCGAGTATGCATTGCCGAGGCAGGAGCAATACCGCCTCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACCCAAGAGCACGCAGTTACAGCACTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATAGTAAATGCTGGAGCCATACCAGATATTGTGGATGTACTAAAAAATGGAAGCATGGAAGCTAGAGAAAATGCAGCTGCAACCCTCTTTAGTTTATCGGTACTAGACGAGAACAAGGTGCAAATAGGTGCAGCTGGAGCTATCCCTGCCCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCAATCTTTAACCTGTCTATTTATCAGGGAAACAAAGCAAGAGCGGTAAAAGCTGGTATAGTAGGCCCGCTGATACAATTTCTGAAGGATGCTGGGGGTGGCATGGTGGATGAAGCACTGGCTATATTGGCAATTCTTGCAAGCCACCATGAAGGCAGGGTAGCGATTGGTCAAGCCGGGCCAATCCCTATACTAGTTGAGGTTATCCGAACTGGGTCTCCACGCAACCGAGAGAATGCTGCCGCAGTCTTGTGGTCACTATGCACCGGAGATCCGCAGCTATTAAAACTAGCAAAAGAACATGGTGCAGAAGCAGCACTGCAAGAGTTATCAGAAAATGGAACTGATAGAGCAAAGAGAAAAGCTGGAAGCATACTGGAACTCTTGCAGCGAATAGAAGGGAATGATAATCTGCGGAATTCTTAG 1896 0.4393 MGGSESSKGVVLGRLVECIKDISGLPECQNFCKRVYGNLVRRVKLLSPLFEELKDSDESLSDEQLESFESLLVALDSAKTLLKAVNQGSKLYQALRRNDTADKFQQVTEKVEAGLSEIPYHKLEISEEVREQIELVHAQFKRAKAQTEFVDIQLDIDMAIAQKEKDPDPAILKRLSEKLHLRTINDLRKESSELHELLITSGGELGDSFEMITSLLSKLRDCVLAENPEIDTSECEKLVVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGSSHSDCDRTAICALLDKLASNNIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVGPLIQFLKDAGGGMVDEALAILAILASHHEGRVAIGQAGPIPILVEVIRTGSPRNRENAAAVLWSLCTGDPQLLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRIEGNDNLRNS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01809 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Lapu7g01809 631 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Lapu7g01809 631 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Lapu7g01809 631 Gene3D - 11 119 IPR036537 GO:0007166
Lapu7g01809 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Lapu7g01809 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Lapu7g01809 631 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Lapu7g01809 631 Gene3D - 335 522 IPR011989 -
Lapu7g01809 631 Gene3D - 523 629 IPR011989 -
Lapu7g01809 631 SMART arm_5 498 538 IPR000225 GO:0005515
Lapu7g01809 631 SMART arm_5 457 497 IPR000225 GO:0005515
Lapu7g01809 631 SMART arm_5 416 456 IPR000225 GO:0005515
Lapu7g01809 631 SMART arm_5 539 579 IPR000225 GO:0005515
Lapu7g01809 631 SMART arm_5 375 415 IPR000225 GO:0005515
Lapu7g01809 631 CDD RING-Ubox_PUB 248 300 IPR045210 -
Lapu7g01809 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Lapu7g01809 631 PANTHER U BOX DOMAIN-CONTAINING 34 620 - -
Lapu7g01809 631 SUPERFAMILY RING/U-box 247 322 - -
Lapu7g01809 631 CDD MLKL_NTD 32 141 - -
Lapu7g01809 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Lapu7g01809 631 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Lapu7g01809 631 FunFam RING-type E3 ubiquitin transferase 329 424 - -
Lapu7g01809 631 FunFam RING-type E3 ubiquitin transferase 457 630 - -
Lapu7g01809 631 SUPERFAMILY ARM repeat 344 619 IPR016024 -
Lapu7g01809 631 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01809 Lapu-Chr7 33882224 33886235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01809 432 625 U-box Gene Family AT3G54850 32.821 7.28e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01809 - - gmx:100777452 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01809 7 33882224 33886235 Lapu7g01809 7 33882224 33886235 ECH