Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01797 ATGGCGGCAGCTTCCTCATCCACTCCATTCTTTGGAATCAGAGAAGAAAGCACTCAGATTACAACACATCATCAACCCTCCGCAGTTTCTCCAACCACAGTGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAAATCCAGACGCGGAGGTGATAGAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGATTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGTATCAAGAAGCACTACTCTCGCAAGCATGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTCTGTGATGCGCTAGCACAAGAGAGTGCAAGATACCCCAGTGGCGTAAACCCTTTGGGGACTCATTTGTTTGGCACAAACCACACTAGTTTAACCCTATCCCAAGTTGGTACCCAACTTTCCCAAGTTCAAAATCAGAACCAAACCACCAATAACAGCATCTTGCGCCTTGGCAGTGTTGGTGCAGCTGTAAAGTTTGAGAACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCCTCAGCTTTCTTCATGAATGACAACACAAATCAAACATTATTTGAAGAACACCAATCACAACAAGGACCACTATTCTCAAGCAAACAACTACATGGCCTAATGCAGCTCACTGATCTTCATGGCAACACCAACAACTCCGATTCTTCATCAGTTGCTGCTCCTAATTCCAATCTTTTCAACCTCAGCTTCTTCCCAAGTAGCAATAGCACTAGCACCATTATCCCTGATCAATTCAACAGCATAAGTGGCAGTGGCCAAGGAACACCACCACTCTATGTTAATAACAACCCTGCAGTAAGTGATCATGTTGGTTCAAGTTTTTCTTCGCTCTTTGGTGATCCAATAGAAAACGTATCATCCCCTCATATGTCTGCCACTGTGTTGCTTCAAAAAGCTTCTCAAATGGGTCCAACCACAACCACCAGCAGTTCTTCTTTACTTAGAGAAATGTGTAACAATGGTTCCAAAGCTGAAAATGGTCACCACCACCACAATCTTCAAGGGTTGATGAACTCCATTGCCGATGGAAACACGTCCTTGTTTAGGAACATGCAAGGGAACGAAAACAGCCTTAGTGGGTTTCACAACGTGGATGAGTCCAACAATAAGTTGCCTCAGAATCTTAATGTAAACTTCGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGCGTTGGGGGAATGGTGAGAAATATGAATGGTGGATTTTCACAGAGAGAACAACTACAACAACAACGTATCATGGGTACTGAGTTCTTTGGACCCTGA 1593 0.4419 MAAASSSTPFFGIREESTQITTHHQPSAVSPTTVPQKKRRNQPGTPNPDAEVIELSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARYPSGVNPLGTHLFGTNHTSLTLSQVGTQLSQVQNQNQTTNNSILRLGSVGAAVKFENLIPPLNQSSFGHSPQSMPSSAFFMNDNTNQTLFEEHQSQQGPLFSSKQLHGLMQLTDLHGNTNNSDSSSVAAPNSNLFNLSFFPSSNSTSTIIPDQFNSISGSGQGTPPLYVNNNPAVSDHVGSSFSSLFGDPIENVSSPHMSATVLLQKASQMGPTTTTSSSSLLREMCNNGSKAENGHHHHNLQGLMNSIADGNTSLFRNMQGNENSLSGFHNVDESNNKLPQNLNVNFGGSDKLTLDFLGVGGMVRNMNGGFSQREQLQQQRIMGTEFFGP* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01797 530 Gene3D Classic Zinc Finger 120 199 - -
Lapu7g01797 530 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 517 IPR031140 -
Lapu7g01797 530 MobiDBLite consensus disorder prediction 1 43 - -
Lapu7g01797 530 SMART c2h2final6 107 137 IPR013087 -
Lapu7g01797 530 SMART c2h2final6 142 162 IPR013087 -
Lapu7g01797 530 SMART c2h2final6 66 88 IPR013087 -
Lapu7g01797 530 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Lapu7g01797 530 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Lapu7g01797 530 Gene3D Classic Zinc Finger 48 116 - -
Lapu7g01797 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Lapu7g01797 530 FunFam protein indeterminate-domain 12-like 45 113 - -
Lapu7g01797 530 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lapu7g01797 530 MobiDBLite consensus disorder prediction 1 51 - -
Lapu7g01797 530 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01797 Lapu-Chr7 33751167 33755621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01797 36 212 IDZ Gene Family AT2G02070 89.266 3.88e-117 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g01797 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01797 K25870 - gmx:100780268 816.224