Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01778 ATGCAGAAAACACACTCTTTCTCCTGCGTATCCTCTTGTGGCAGTGATAGTGCTTACTTAGAAGCTGACGAGGTTGGCAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCCTTGCCACCCCAAATCCAAAGTCTCTAGCCCTAAACACTCTTCTGCTATGCGTGGTTATCAGAAAAACCCTAGCTCCGATGACCTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACTGCTACCAAATCTTCTTCCACTCCGATTCCTGGTCGATATTGGATCCCTACTACTCAACAAATCCTTATTGGACCCACTCAATTCTCTTGCACAGTCTGTAACAAAACGTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTACAGGAAAGGGACGGAGTCATTGAGAGGGTCAAAAGCAGGTTCTTCCATGCTGAGGCTTCCCTGCTACTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTTAAGGATTTCAGAACCCTCCAAACACACTACAAAAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGTCATAAGGCATTTGCAGTTAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGAAAGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGGTCCCTCAAAGACCATGTCCGTGCATTCGGGAATGACCATGCTCCACACACCTTGGGTGAAGAAAGAGGCAGTGAAGGCTGTGGAGATGATGAGAGTGAAGTGGTTTTTTTTAGTTTGAAATAA 816 0.473 MQKTHSFSCVSSCGSDSAYLEADEVGNEDSISLSLGPPCHPKSKVSSPKHSSAMRGYQKNPSSDDLSGVTVALHIGLPTTATKSSSTPIPGRYWIPTTQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGTESLRGSKAGSSMLRLPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCHKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNDHAPHTLGEERGSEGCGDDESEVVFFSLK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01778 271 SUPERFAMILY beta-beta-alpha zinc fingers 95 131 IPR036236 -
Lapu7g01778 271 Gene3D Classic Zinc Finger 134 218 - -
Lapu7g01778 271 FunFam Zinc finger protein WIP2 162 244 - -
Lapu7g01778 271 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Lapu7g01778 271 MobiDBLite consensus disorder prediction 45 65 - -
Lapu7g01778 271 SUPERFAMILY beta-beta-alpha zinc fingers 178 213 IPR036236 -
Lapu7g01778 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Lapu7g01778 271 SMART c2h2final6 108 130 IPR013087 -
Lapu7g01778 271 SMART c2h2final6 193 213 IPR013087 -
Lapu7g01778 271 SMART c2h2final6 156 188 IPR013087 -
Lapu7g01778 271 MobiDBLite consensus disorder prediction 30 65 - -
Lapu7g01778 271 Pfam Zinc finger, C2H2 type 108 127 IPR013087 -
Lapu7g01778 271 Gene3D Classic Zinc Finger 107 130 - -
Lapu7g01778 271 PANTHER ZINC FINGER PROTEIN WIP2 25 251 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01778 Lapu-Chr7 33435353 33436791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01778 26 251 C2H2 Transcription Factor Family AT1G13290 66.383 1.19e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g01778 zf-C2H2_6 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01778 - - gmx:100784037 473.011