Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01739 ATGAAGAAGTATCTCAGAGGAGAAGGTGCTAATTTGGAGGTTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGCTAAGGAACAGTTATATGGAAAATCTGCACAAGCTGCTGCTAAGGCCGAGAAGTGGCTTATGCCTAGTGAAGGAGGTTATCTAGAGGCTGAAGGCTTGGAAAAGACATGGAGGATCAAACAGGAGGCAATAGCTCATGAAGTAGATATCTCAAGCTCACGGAAACAGTATGATATTATTTTACCAGAACTTGGTCCGTACACTCTGGATTTTACTTCAAGTGGCCGGTATATGGCTTTGGGTGGTCGTAAGGGCCATCTAGGAATAGTGGACATGATAAATCTGAACCTAATTAGAGAGCTTCAGGTAACGGAAACAGTGCGGGATGTTGTATTCTTGCACAATGAGCTCTTTTTTGCTGCTGCTCAGAAAAGGTATCCCTACATCTATAATCGAGAAGGCACGGAGCTTCACTGCCTCAAGGAACATGGTCCAGTGATAAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTAGCTACAATCAATAAATTTGGGCAACTTCGCTATCAAGATGTTACAATGGGTTCAATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAAATGTCATGCAAGTAAACCCCTTCAATGGGGTTGTTTCTTTAGGTCACTCAAATGGTACTGTTACCATGTGGAAGCCGACCAGTTCTGCTCCCCTTGTCAAGATGCTATGTCATCATGGGCCTGTCTCAGCGCTGTCATTTCACTCAAATGGTCACTTGATGGCCACTGCGGGGAAAGATAAAAAAATTAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTTCAAACCTTACCCGGTCATGCAAATACTCTGGACTTTAGTCAAAAGGGCTTACTTGCTTGCGGTAATGGTTCATTGATCCAGGTTCTGCGTGATGTTTCTGGTACACAGAATTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCCGGTAGGAAAATTAATATTTCGACCATATGAAGATGTTTTAGGTATAGGGCATTCCATGGGTTGGTCTAGTATTCTTATTCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTCGAAACTTCCAAACAGAGGAGAGAAAAGGAAATACGGGCTCTACTTGATAAACTCCCACCTGAGACTATCATGCTGGATCCCAGCAAGATTGGTACGGTGAAACCAAAAACAGAGAGGCTAACAAAGCAAGAGACAGAGGCTGAGATAGAAGCTGCCGTTGAAGCTGCTAAGGGCATGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAAGGGTACAGAAAAAGCAAGAGGCAGTTACTAGAGTGAAGAGGCCCTATTTGGAGCAGAAAATTCAAGAAGAGGAAAACATGTCAAAAAAGAAGCAGAAAACTAGTGAGGGTGTTGAACTACCAAAATCTTTACAACGGTTTGCTCGTAAAAAAGCATCGTCATGA 1524 0.4291 MKKYLRGEGANLEVLKDKKLKGQLAAKEQLYGKSAQAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQEAIAHEVDISSSRKQYDIILPELGPYTLDFTSSGRYMALGGRKGHLGIVDMINLNLIRELQVTETVRDVVFLHNELFFAAAQKRYPYIYNREGTELHCLKEHGPVIRLQFLKNHFLLATINKFGQLRYQDVTMGSMVGNFRTGLGRTNVMQVNPFNGVVSLGHSNGTVTMWKPTSSAPLVKMLCHHGPVSALSFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSRYMTHSMVKGYPVGKLIFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRALLDKLPPETIMLDPSKIGTVKPKTERLTKQETEAEIEAAVEAAKGMKLKKKTKGRNKPGKRVQKKQEAVTRVKRPYLEQKIQEEENMSKKKQKTSEGVELPKSLQRFARKKASS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01739 507 Pfam WD domain, G-beta repeat 249 280 IPR001680 GO:0005515
Lapu7g01739 507 SUPERFAMILY WD40 repeat-like 85 355 IPR036322 GO:0005515
Lapu7g01739 507 Pfam BING4CT (NUC141) domain 328 406 IPR012952 -
Lapu7g01739 507 MobiDBLite consensus disorder prediction 438 507 - -
Lapu7g01739 507 PANTHER WD-REPEAT PROTEIN BING4 2 502 IPR040315 -
Lapu7g01739 507 Coils Coil 422 442 - -
Lapu7g01739 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 282 - -
Lapu7g01739 507 Gene3D - 60 213 IPR015943 GO:0005515
Lapu7g01739 507 Gene3D - 214 325 IPR015943 GO:0005515
Lapu7g01739 507 SMART WD40_4 241 280 IPR001680 GO:0005515
Lapu7g01739 507 SMART WD40_4 199 238 IPR001680 GO:0005515
Lapu7g01739 507 SMART WD40_4 283 317 IPR001680 GO:0005515
Lapu7g01739 507 SMART WD40_4 77 116 IPR001680 GO:0005515
Lapu7g01739 507 SMART WD40_4 119 156 IPR001680 GO:0005515
Lapu7g01739 507 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Lapu7g01739 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 289 IPR001680 GO:0005515
Lapu7g01739 507 SMART BING4CT_2 327 407 IPR012952 -
Lapu7g01739 507 FunFam U3 small nucleolar RNA-associated protein 7 80 362 - -
Lapu7g01739 507 MobiDBLite consensus disorder prediction 454 490 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01739 90 303 U-box Gene Family AT2G33340 24.779 4.42e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01739 K14768 - gmx:100786818 934.48