LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g01737	ATGAACTGTCTTCACAATCTTTCGCGATTCTCTCCTTTGCCCTTCGAAACTGTTGCCACGCGCCACCGCAACAACCTTCCCCTTTCCGTGAGAATCGTCAGTAATTCTCATCATAATCGAAGTATGGCGCTCAAGGCTGCTTCAGGTTCTGTACCAAGTGCAGACAAAAGTAGTGTAGACAAGGAGGAGGAAAAGTCTGAGATATATTCTCATAACATGACAGAAGCCATGGGTGCAGTTTTGTCTTATAAGCATGAATTAGGAATGAACTATAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCCACAGACTCCTGACGATGTTGAGAAGTTGCGCAGAATTGGAGTGAAAACTATATTTTGCTTGCAACAAGATTCAGACCTTGAATATTTTGGAGTTGATATTAAGGCCATAGGAGAATATGCCAAGGCACATGATGTTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTACGCATGCGGCTTCCAGCTGTAGTTGGCAAACTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCAACGGCCTACATGTTTTGGGTTCTGGGTTATACATTTAATGAGGCTCATACACTACTTCAGAGCAAAAGGGAGTGCTTTCCGAAACTAGATGCCATTAAAAGTGCGACCGCTGACATTCTTACAGGCCTCAGTAAGAAAGCTGTCACTTTGTCATGGGAAGACAGCAATTGCTCTAGGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTACCCCTACATTTTGATGACAAATCGGGTTTGTGGTATCTCGAGAAGGAATTACCTGAAGGACGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTCATTCAAGTCCTTGATAATAGCAGCAGTGATCGTGTCTCCCTTCGGGAGAGATTCACTTCTGATGATCCTGATCTTACAAAGGAGGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATCTGTGA	1116	0.4346	MNCLHNLSRFSPLPFETVATRHRNNLPLSVRIVSNSHHNRSMALKAASGSVPSADKSSVDKEEEKSEIYSHNMTEAMGAVLSYKHELGMNYNFIRPDLIVGSCPQTPDDVEKLRRIGVKTIFCLQQDSDLEYFGVDIKAIGEYAKAHDVQHLRAEIRDFDAFDLRMRLPAVVGKLYKAINSNGGVTYIHCTAGLGRAPAVATAYMFWVLGYTFNEAHTLLQSKRECFPKLDAIKSATADILTGLSKKAVTLSWEDSNCSRVEISGLDIGWGQRVPLHFDDKSGLWYLEKELPEGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFIQVLDNSSSDRVSLRERFTSDDPDLTKEERLRIKEFLEACPDEDL*	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g01737	371	Pfam	Dual specificity phosphatase, catalytic domain	143	227	IPR000340	GO:0008138\|GO:0016311
	Lapu7g01737	371	Gene3D	Immunoglobulins	244	334	IPR013783	-
	Lapu7g01737	371	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	90	246	IPR020422	GO:0006470\|GO:0008138
	Lapu7g01737	371	SMART	dsp_5	90	239	IPR020422	GO:0006470\|GO:0008138
	Lapu7g01737	371	Pfam	Glycogen recognition site of AMP-activated protein kinase	249	332	IPR032640	-
	Lapu7g01737	371	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	87	230	IPR029021	-
	Lapu7g01737	371	CDD	E_set_AMPKbeta_like_N	249	329	-	-
	Lapu7g01737	371	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	244	334	-	-
	Lapu7g01737	371	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	5	369	-	-
	Lapu7g01737	371	CDD	DSP_laforin-like	89	235	IPR045204	GO:0019203
	Lapu7g01737	371	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	83	264	-	-
	Lapu7g01737	371	SUPERFAMILY	E set domains	248	330	IPR014756	-
	Lapu7g01737	371	MobiDBLite	consensus disorder prediction	43	66	-	-
	Lapu7g01737	371	Gene3D	Protein tyrosine phosphatase superfamily	83	362	IPR029021	-
	Lapu7g01737	371	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	166	224	IPR000387	GO:0016311\|GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g01737	Lapu-Chr7	32941090	32950135	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g01737	89	371	Protein tyrosine phosphatase (PTP) family	AT3G52180	67.606	7.62e-148	417

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g01737	-		-	pvu:PHAVU_007G145000g	646.351