Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01716 ATGGGTCGCGAGACTGTATTCCTTCCAGCCCCACCAACCACTGCCACCACTACAGTGAACCCAGTGGCTGCACCAGCTGCACCACCTACCTCTCTTGCTCCTGGTTTCAGGTTCCACCCAACTGATGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTCTGGCAAAAGCTTCCGATTTGATGCTATATCTGAAGTGGATATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAGTCCAGGTTGAAGACCAGGGACCAGGAGTGGTATTTTTTTAGTGCATTGGACAAGAAATATGGGAATGGTGGGAGGATGAACAGGGCTACCAGCAAAGGGTATTGGAAAGCTACTGGGAATGATCGACCAGTGAAGCATGATCAAAGGACTGTGGGGTTGAAGAAAACTTTGGTGTTTCACAGTGGCCGAGCTCCTGATGGAAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGTTGACGAGGAGCTAGAGAGGGCTGAGACTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTATGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGATATGCACCCTTCATTGAAGAAGAGTGGGATGATGTAACGGGAATGGTTCCAGGGGCAGAGCCTGTGTGTAACGGCTCTATTGGCCACCAACCACGTGTCGATGGCAATGGTGGTGTTTTATGCGCAGAAGGGAGAAATGGTGTTGTACAGGACACTCAATCTATCAATAAAGCTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAACCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCCGAGTATCCATCCCCTGAAAAGGATGATAATAATTGTAAGCAAGTGGATGAGTACCCTTCACCTCAAACAGACAATCCAAAGCCTTTCTCTCAAATATACAAGCGAAGGCGGCATAACCTGAACTCCAACCACTCTAATGTTTCTGGGGATTCAATCCGAACCAGTCAGGACCCATGCTCCTCTACAATAACTACTGCTGCAACCACACTCCCAACCACCACTACTGGTGCCACTACCACCAACACTGCACCAAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCAAGAGTCCCTTGAATCTAAGGAAAGTCTTGCTTTGATTAAGGCACCAGATTTTGACGCGGAAAACCTTGAGTCATCCATGCCTCCAAGCTCTGCCAAGTTCATCAAGAACTTGCAGAGCGAGATCCATAAGCTTGCAGTTGAAAAGGAGACGATGAGGTTCGAGATGATGAGCGCTCAAGCAATGATCAACATTCTCCAGTCTCGCGTTGACAGTCTCAGCAAAGAAAATGAGGATTTGAAGAGGGCAGCCCAAAATCCTTAG 1389 0.4737 MGRETVFLPAPPTTATTTVNPVAAPAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAETGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDVTGMVPGAEPVCNGSIGHQPRVDGNGGVLCAEGRNGVVQDTQSINKAPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKQVDEYPSPQTDNPKPFSQIYKRRRHNLNSNHSNVSGDSIRTSQDPCSSTITTAATTLPTTTTGATTTNTAPKKHFLSALVEFSLQESLESKESLALIKAPDFDAENLESSMPPSSAKFIKNLQSEIHKLAVEKETMRFEMMSAQAMINILQSRVDSLSKENEDLKRAAQNP* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01716 462 Coils Coil 410 458 - -
Lapu7g01716 462 MobiDBLite consensus disorder prediction 320 337 - -
Lapu7g01716 462 SUPERFAMILY NAC domain 26 187 IPR036093 GO:0003677|GO:0006355
Lapu7g01716 462 MobiDBLite consensus disorder prediction 279 307 - -
Lapu7g01716 462 Gene3D NAC domain 41 189 IPR036093 GO:0003677|GO:0006355
Lapu7g01716 462 ProSiteProfiles NAC domain profile. 32 186 IPR003441 GO:0003677|GO:0006355
Lapu7g01716 462 MobiDBLite consensus disorder prediction 318 337 - -
Lapu7g01716 462 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 326 - -
Lapu7g01716 462 FunFam Nac domain-containing protein 86 41 189 - -
Lapu7g01716 462 Gene3D - 397 462 - -
Lapu7g01716 462 MobiDBLite consensus disorder prediction 293 307 - -
Lapu7g01716 462 Pfam No apical meristem (NAM) protein 34 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01716 Lapu-Chr7 32708583 32721057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01716 1 457 NAC Transcription Factor Family AT3G10480 43.013 2.00e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu7g01716 NAM 2.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01716 - - gmx:100808783 775.393