Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01712 ATGGAAGCACCAGAGGAACTCTCTCTGGGGGGGTCCAAAGATCACGCCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTGAGGCCACAATCCCCTATCCCCTTCTCCATCACTGCCAATTCCTCCACCGGAGAGGGAGAAAGAGAAGATTGCTACAATGTTGATGACAACACCAACACCACCACCAACAAAAATGATGATGTTAATAACAACATTAACATTAACAACATTAACATCAACAACAATAACAGCTCTCCCACCACTTCTTCTGCAGGATTACAAGACAGCACAGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTTCTTGCACAAGGGCAATCCCGGGAATCTCCCAAACATGCCGAGGAAGATGTGGGCATGAACTACGCCAAGTACAGCAGTAGAAAATTCTTGGAAGCGGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGCAACAGAACTTTCCCTTCTTTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCAATGATGGCCATTGGCCAAGAGAAGAAGCAGCAACACCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAATAAATCCCCATTTTCCCTTCAACTCAATACAAAGGGGAATTTGTACAACAACAAGTCCAAGGTGCATGAGTGCTCCATCTGTGGTGCTGAATTCACATCAGGACAGGCACTGGGAGGCCACATGAGACGCCACCGCGCACCGGTTGGGATCCCCACCACACTCTCATTCACCCCGTTGGCTTTGGAACCAGAAGAAGATCACCCCAGAAAGAAAAGGAATGTGTTGAACTTGGAATTGGATCTCAATCTTCCTGCCCCTGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACAACAACAACATGGACAGAAACAACAACAGCAGCAGCAACAGCAACAACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA 1029 0.4684 MEAPEELSLGGSKDHANIVKGKRTKRVRPQSPIPFSITANSSTGEGEREDCYNVDDNTNTTTNKNDDVNNNININNININNNNSSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHAEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMMAIGQEKKQQHLLSSDEEEFQLKTNNKSPFSLQLNTKGNLYNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDHPRKKRNVLNLELDLNLPAPEDDQRESKFSFASKQQQQHGQKQQQQQQQQQPQTSLVLTAPALVDCHY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01712 342 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Lapu7g01712 342 MobiDBLite consensus disorder prediction 1 49 - -
Lapu7g01712 342 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Lapu7g01712 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 252 IPR013087 -
Lapu7g01712 342 MobiDBLite consensus disorder prediction 78 94 - -
Lapu7g01712 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Lapu7g01712 342 MobiDBLite consensus disorder prediction 289 330 - -
Lapu7g01712 342 MobiDBLite consensus disorder prediction 304 330 - -
Lapu7g01712 342 PANTHER ZINC FINGER PROTEIN ZAT5 85 316 - -
Lapu7g01712 342 MobiDBLite consensus disorder prediction 31 47 - -
Lapu7g01712 342 Gene3D Classic Zinc Finger 132 210 - -
Lapu7g01712 342 Gene3D Classic Zinc Finger 211 260 - -
Lapu7g01712 342 SMART c2h2final6 230 252 IPR013087 -
Lapu7g01712 342 SMART c2h2final6 154 176 IPR013087 -
Lapu7g01712 342 MobiDBLite consensus disorder prediction 78 98 - -
Lapu7g01712 342 Pfam C2H2-type zinc finger 229 255 - -
Lapu7g01712 342 Pfam C2H2-type zinc finger 153 179 - -
Lapu7g01712 342 SUPERFAMILY beta-beta-alpha zinc fingers 153 252 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01712 Lapu-Chr7 32670003 32671031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01712 1 342 C2H2 Transcription Factor Family AT5G04390 45.000 5.86e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g01712 zf-C2H2_6 6.8e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01712 - - gmx:100799383 510.375