Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01698 ATGAACAGTAGCACCTCCGATAAGGACCATGGTTTTGGCGCAGGCGGGTTCACATATGGAGTAGCTTTTGTAATTGGGATGGTGGTCTTACTTCTCACGGTGGCTGTTGCATGTGTGCGCCTTCGCATGGCTCGAGGTCCCAACATGCTCAATATTTTGACTGGTATTCCACCATCTGGTCACACAAGAGATGAAGACTCAGCTGAACAAGGCCTAAGACCTCATCACATTGACACAAGTTTTGAAAGCTATCCCAAACTTCTATACTCTCAAGTAAAGGGTTCAACTTTAACCAACATCTGTTCTTCTAGCTGCTCCATCTGCTTAGGTGACTACAAAGAGGGTGACATGTTGAGGTTACTTCCTCACTGTCACCATTTTTTCCACCTTGCTTGCGTTGATCCATGGCTTAGTTCAGAGGAGTCTGTGTTATTGCTTGTCAGCTTTATTATTCTTACCCTTATCGTCACACTTGCAGCTTATTTGTGCTCCACTGATATTCCACGCACTACTCCTTCTGTGCCTGTTGGTGTCACACACTCTAATCACCACACCACAATCACTGTGGAGGCACCTGAGCCATGCACAGATCAGAGTGTGTGCAGCTTTCCAAGTCTTCAATTTTCCAAAGCTAAATTGTGTAGTAGCACTAGCAGTAGCTCTTCAAGCTGTTCCATATGCTTGATGGATTACAAAGAGTGTGATTCCTTGAGAGTGCTGCCTGCCTGTGGTCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATTTGACCTGTCCAGTTTGTAGAAACCCTATAACCCTCTCAGATGTAAGTAAAACTTTGTAA 837 0.4468 MNSSTSDKDHGFGAGGFTYGVAFVIGMVVLLLTVAVACVRLRMARGPNMLNILTGIPPSGHTRDEDSAEQGLRPHHIDTSFESYPKLLYSQVKGSTLTNICSSSCSICLGDYKEGDMLRLLPHCHHFFHLACVDPWLSSEESVLLLVSFIILTLIVTLAAYLCSTDIPRTTPSVPVGVTHSNHHTTITVEAPEPCTDQSVCSFPSLQFSKAKLCSSTSSSSSSCSICLMDYKECDSLRVLPACGHFFHVKCVDPWLRINLTCPVCRNPITLSDVSKTL* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01698 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 143 IPR013083 -
Lapu7g01698 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 271 IPR013083 -
Lapu7g01698 278 ProSiteProfiles Zinc finger RING-type profile. 224 266 IPR001841 -
Lapu7g01698 278 SMART ring_2 105 166 IPR001841 -
Lapu7g01698 278 SMART ring_2 224 265 IPR001841 -
Lapu7g01698 278 Pfam RING-like zinc finger 105 133 IPR001841 -
Lapu7g01698 278 SUPERFAMILY RING/U-box 99 141 - -
Lapu7g01698 278 SUPERFAMILY RING/U-box 217 271 - -
Lapu7g01698 278 Pfam Ring finger domain 223 266 IPR001841 -
Lapu7g01698 278 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 146 269 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01698 Lapu-Chr7 32558033 32560043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01698 196 266 C3H Transcription Factor Family AT5G06490 52.703 6.69e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01698 - - vra:106770594 379.793