Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01689 ATGGCTGGTAACTTCAGATTCACCATGGATCAGAAGGACATTGTTAGATTCTTGACTACAACTATTGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAGCAAAGAGCCCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTAGTGACAAGGACACTGAGGTGGAATACTCAGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACCAAGCTTGCCAGGCTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCCAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACACCTAAATCTATCCTACTTGTGGAAGTTGAGGAACAACATTCAAAATTGTGTTCTGCATGTTCTTGAGATGTTCATTGTTGACCCTTTTTTTTCCCGGATTGATTTTGCTCCTGAACTATGGAAAAACCTGTTTCTTCCACACACGAGCTCGATTGTGGGTTGGTATTCTGAGGAGAGGCATAGGCTTATGATGGAAGTGATACCGGACTCTTGTGATTTGTCCTTTACAGCTGATTTTGAACGATTTTTCAACGAGTCTTTGGTATTTTCTATGAGGCCACATCAATTAGACAAATTGCAAAAGCTGGAGCAGCTTTACGCAGAATCATTGGATGAAAACACACGGCTATACGCAAAATATTATAAAGATTGCATGAATTCTGATTCCAGTTCAGGCAAGAAGGCAGCTCCTATGTTGCCTATTGCTGAACCACCAAGGACTCCTTTGCATGAGTTGAGTAGGTCTGTTCCTGATTTCGTAAAATTTGGTCCTATTTTGCCTAAGAGTGCGGGGTTCTCTTTGACAACAAGATCTAAAGGTGTAAATGAAACAATCAGCAGAGAGAATTCAACTTCCAGCCAATCAAAGGTGGAGAAATCATCGATATGGGGTGCTAAGGAGAGGATCATTGAAGAGAATGAGAATGAAGATGATTCAGATTCAGAGCTTGAAGACGCTTCTGTGGATTCAGATGGAAAAAACAATATTTTATCACCAGGAATGAAGATGGTCAAGGATGAGGATATTGAGTCAATGGCGCCTCTATCAAAGCATATGAATCAGATTCATTCTCCTGATATCTTCTCTCCCTTGGATTCACCAAAAACAGGTCCAAATAATTCATCCACAAATCCTGATTCAAACAGTAAAAGAGAACCCAAGTATCTTCGCTTACTGTCTACTCGTTTGAGGGACTCAACTATTTCTGACTCTTTATCATCATCTCTGGAAATGAGCACGGATCATATTTTCAACTCTAATAAAGAAGTAATGGGCTTCAAGAATATTAAGAGGAAAAACAATAACCAATCACCAAGTATGAACCATGACAATGGGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAAGTGACGAGGAAAATCAAAGCTTTACTACGTTGCCAAAGTTAGAGAAGCTGGCAATTGGATCAAAACCACCAAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTGACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAATGGCTCAGAACAGGTAACACGACATGCCCCATCACGCGACAGCCTCTATCTGCAAATATATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACGTCATGGAAAGAACAGAATCCCGAACTGTCGCAAGAACTCTCGAATTCTAACACACCAAGGAGTTCTTCCTGTTCTCCATCCGCAAAAGACTTCCAAATGCTCTCCATTACACAAAGAACAACGGATTCACCAAGTCTGAAGAGCAAAGAAAATTATATCAGACAAAGGAGCAACAGATTTATGCGAGTTTCTGTTGCAACATCCCCAACTAGTGTGCTATCTCAAGCTGCAGTTGAAACAATTTTGAATTCGTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACTTGCAAGAATGTGAAGAAGCTGTATTGGAAATAGCAAGACTATGGAAAGATTCAAAGACTGATCCTCAGATTCATGCTTATTTATCAAAGCCAACAATCATAAGTGGTTTGGTGGAAATACTTTCAGCTTCTCTGGATAGAGAAGTTTTGAGAACGTCAATTTATATACTTTCTGAGCTGATATTTTTAGATGAAAGTGTTGGAGAAACACTTAACAGTGTTGATTCTGATTTTGATTGCTTGGCTACTCTGCTTAAGAATGGTTTAGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTTGGTACATGAACTTGTACCATCTCTTGTGCAAGTGATTCAGAACAAAAATGAGGCGTCAGATGATTTTCAGTTAGTTATAGACCCCAAAGATGCTGCGATAGCAATTCTTGAGCAAATTTTAATAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTATGTGTTATTTCTGAAAATGGAATTCCATCCTTAGCGAAGTATCTGGAGAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAGGTTGCAAGAGTTTGATAGCTAACAGAATTGAATTGTCACCTGTTCTTGAATTATTTCACGCTGGAAATGATAATGTGAGAGGCATCTGCGTGGAGTTTCTCTCAGAACTGGTTCAATTGAATAGAAGAACGGTCTGCAACCAGATATTACAGACAATCAAGGATGAAGGAGTGTTTAGTACGATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAAGTGGCTGTTGCTAGTCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCACGGAAGATGAGCATTTACAGGGAAGAAGCGATAGAGACACTTATAGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTTTGGATGCTTTACTGTTTCTTATTGGACAAGTAACCACCTCCGGAAAGTCATACACGGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCAACCTTACAACGCTTTACTTAAGCCTGGGCTGTTGGGACAGTATGATGATGAATCAATGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTTTGCAACCATGAGAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCTTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTCGCATGGCTCACACACATGCTCTCTACTCTTCCTGACACTGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTCCTGCAATCATCTAAGAACCTGGAGGAGATGATATTGGCTAGCCTAGCCTTGAAAACTTTCATTAGTGATTCAATTACTCAAGAAGCACTTCGAGCTCATGCTAAAAGCATCTACAGAACCATGAGAAAGCTGAAGAGATATTCAACAGTAGCAGTTGATATTATGAAAGCCTTACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAGGAAGTTGTTGAGTTAGATTTGAGTTCAAATGGAGAGGTGCTTTCTTTGCATTACATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAAAGGATACCAAGAGTGATTCAAGAAACTCGTGAGCACACAAAAGCTGTAACATCTCTCTGTTCTTCAGATGATAGACTATACAGTGGTTCCTTAGACAAAACCATCCGGCTTAATAATAGTATCGAATATGCTCCACTGAATGATACTGCTCATGTACAGATTTGGACAATCAAACCAGATGAGATTAAATGTTTAGATGTTCATGACGTAAAGGAGCCGGTGTATGAGCTGACAGCCAATTCCAAATTGGCATGCTATATATCTCAAGGAAGTGGAGTTAAGGCAAGCCTAATATGTTTTTAA 4017 0.3966 MAGNFRFTMDQKDIVRFLTTTIDSFIQDRLINKEQRAQHKEQCAERLAAEDGSSDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNNIQNCVLHVLEMFIVDPFFSRIDFAPELWKNLFLPHTSSIVGWYSEERHRLMMEVIPDSCDLSFTADFERFFNESLVFSMRPHQLDKLQKLEQLYAESLDENTRLYAKYYKDCMNSDSSSGKKAAPMLPIAEPPRTPLHELSRSVPDFVKFGPILPKSAGFSLTTRSKGVNETISRENSTSSQSKVEKSSIWGAKERIIEENENEDDSDSELEDASVDSDGKNNILSPGMKMVKDEDIESMAPLSKHMNQIHSPDIFSPLDSPKTGPNNSSTNPDSNSKREPKYLRLLSTRLRDSTISDSLSSSLEMSTDHIFNSNKEVMGFKNIKRKNNNQSPSMNHDNGNSLGLNDSSLCESDEENQSFTTLPKLEKLAIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPELSQELSNSNTPRSSSCSPSAKDFQMLSITQRTTDSPSLKSKENYIRQRSNRFMRVSVATSPTSVLSQAAVETILNSLKPYISSLCTSENLQECEEAVLEIARLWKDSKTDPQIHAYLSKPTIISGLVEILSASLDREVLRTSIYILSELIFLDESVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLLVHELVPSLVQVIQNKNEASDDFQLVIDPKDAAIAILEQILIGGDEYSRSLNALCVISENGIPSLAKYLERMEGRRSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDNVRGICVEFLSELVQLNRRTVCNQILQTIKDEGVFSTMHTFLVYLQMAPMEHQVAVASLLLQIDLLVEPRKMSIYREEAIETLIEALWQKDFSNTQMKALDALLFLIGQVTTSGKSYTEAWLLKIAGFDQPYNALLKPGLLGQYDDESMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVAWLTHMLSTLPDTGIKDVARKSLLDELINVLQSSKNLEEMILASLALKTFISDSITQEALRAHAKSIYRTMRKLKRYSTVAVDIMKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYMNGQVLSGHSDGTIKVWDARKRIPRVIQETREHTKAVTSLCSSDDRLYSGSLDKTIRLNNSIEYAPLNDTAHVQIWTIKPDEIKCLDVHDVKEPVYELTANSKLACYISQGSGVKASLICF* 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01689 1338 SMART WD40_4 1240 1277 IPR001680 GO:0005515
Lapu7g01689 1338 SMART WD40_4 1197 1235 IPR001680 GO:0005515
Lapu7g01689 1338 Pfam U-box domain 514 584 IPR003613 GO:0004842|GO:0016567
Lapu7g01689 1338 MobiDBLite consensus disorder prediction 388 415 - -
Lapu7g01689 1338 MobiDBLite consensus disorder prediction 254 273 - -
Lapu7g01689 1338 MobiDBLite consensus disorder prediction 305 369 - -
Lapu7g01689 1338 MobiDBLite consensus disorder prediction 388 419 - -
Lapu7g01689 1338 SMART Ubox_2 516 580 IPR003613 GO:0004842|GO:0016567
Lapu7g01689 1338 SUPERFAMILY WD40 repeat-like 1208 1289 IPR036322 GO:0005515
Lapu7g01689 1338 MobiDBLite consensus disorder prediction 587 606 - -
Lapu7g01689 1338 SUPERFAMILY RING/U-box 512 585 - -
Lapu7g01689 1338 CDD RING-Ubox_PUB 514 566 IPR045210 -
Lapu7g01689 1338 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1333 - -
Lapu7g01689 1338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 596 IPR013083 -
Lapu7g01689 1338 Gene3D - 641 1015 IPR011989 -
Lapu7g01689 1338 Pfam WD domain, G-beta repeat 1217 1235 IPR001680 GO:0005515
Lapu7g01689 1338 MobiDBLite consensus disorder prediction 305 326 - -
Lapu7g01689 1338 ProSiteProfiles Trp-Asp (WD) repeats profile. 1222 1235 IPR001680 GO:0005515
Lapu7g01689 1338 ProSiteProfiles U-box domain profile. 512 587 IPR003613 GO:0004842|GO:0016567
Lapu7g01689 1338 Gene3D - 1183 1328 IPR015943 GO:0005515
Lapu7g01689 1338 SUPERFAMILY ARM repeat 624 1149 IPR016024 -
Lapu7g01689 1338 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01689 Lapu-Chr7 32494153 32500933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01689 504 785 U-box Gene Family AT1G49780 28.328 1.63e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01689 - - gmx:100776142 2270.74