Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01685 ATGGCCACAGAAGAAGAAATTTCATCTTTGAAACTGATGCGCCAATATCTCTTGGGAGATATTTCAGACCCTTTTCTCACCAACCTCATTCCTGTAAAAGTTGAAGACCCCTCCTCATCAGAACTTGATTTGGATTCGAACTTCTCAGAACAAAGCAGCTTCTGCAGGTTTCTAGAATGCTTTGATTTTGAAGCAGACAAAGAAGGGATAGGTCTCACTTCTCATCATAAAATCCAAAACTCCATTGCAACAAGTCCACCACAGAATTCTGATTTGACAGATCCAATTGTGTCAGCGAAAAAGGAAGCAACATGTAGTTATGAGGCTAGACGTTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCAGCAGAGATCCGTGACCCCAAAAGGAAAGGGAGAAGGGTGTGGCTAGGCACGTATGACAGCGAGATTGATGCTGCTAAGGCTTATGATTGTGCCGCCTTCAGAATGAGGGGTCAGAAGGCTGTATTGAATTTCCCCTTAGAGGCTGGAAAGTCTCATCCAGAGCCCAACACTTGTGGCAGGAAAAGAAGAGACTGCACAACAGCTGCCACACCTTCAACTCACATTATGTCATGA 606 0.4505 MATEEEISSLKLMRQYLLGDISDPFLTNLIPVKVEDPSSSELDLDSNFSEQSSFCRFLECFDFEADKEGIGLTSHHKIQNSIATSPPQNSDLTDPIVSAKKEATCSYEARRYRGVRRRPWGKFAAEIRDPKRKGRRVWLGTYDSEIDAAKAYDCAAFRMRGQKAVLNFPLEAGKSHPEPNTCGRKRRDCTTAATPSTHIMS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01685 201 Gene3D AP2/ERF domain 110 171 IPR036955 GO:0003700|GO:0006355
Lapu7g01685 201 CDD AP2 119 169 IPR001471 GO:0003700|GO:0006355
Lapu7g01685 201 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Lapu7g01685 201 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Lapu7g01685 201 MobiDBLite consensus disorder prediction 171 201 - -
Lapu7g01685 201 SUPERFAMILY DNA-binding domain 111 171 IPR016177 GO:0003677
Lapu7g01685 201 FunFam Ethylene-responsive transcription factor 2 110 171 - -
Lapu7g01685 201 PRINTS Ethylene responsive element binding protein signature 151 171 IPR001471 GO:0003700|GO:0006355
Lapu7g01685 201 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Lapu7g01685 201 PANTHER DNA-BINDING DOMAIN 81 176 IPR044808 GO:0003700|GO:0009873
Lapu7g01685 201 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01685 Lapu-Chr7 32432345 32434303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01685 93 187 AP2-EREBP Transcription Factor Family AT5G07580 63.158 2.55e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu7g01685 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01685 - - pvu:PHAVU_007G135900g 341.658