Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01622 ATGGAGATAACTGGAGGAGCTGATGTTGCCGAAAGTGTAGCTCAATTTGCAAGAAGGCGTCAGCGTGGGGTTTGTGTGCTCAGCGGCAGTGGCTCGGTGGCCAATGTTACTCTAAGACAACCTGCTGCTCCTGGAGCTGTGGTGGCACTTCATGGGAGGTTTGAGATTTTGTCCCTCACTGGGACTTTCTTACCTGGTCCTGCTCCTCCAGGATCCACTGGACTCACAGTGTATCTTGCTGGAGGACAAGGCCAAGTACTAGGAGGGAGTGTGGTTGGGCCTCTAGTTGCAACAGGACCAGTGATGGTGATTGCTGCAACTTTTACTAATGCAACATATGAGAGACTTCCACTTGATGAGGATGATGAGGGGCCTAGTTCCGCCGCTGCTGTACAAGGAGGAGGATCGCCGCCACCACTTGGAATTGGAAGTAGTGGGGGTGGTCAGTTGCAAGGAGGGATTCCAGATCCATCATCTTTGCCTTTGTATAATCTTCCACCAAATGGAGGAGGGGGGCAAGTGGGGCATGAAGCCCTTGCTTGGGCTCATGGACGAGCACCTTTCTGA 567 0.5273 MEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVLGGSVVGPLVATGPVMVIAATFTNATYERLPLDEDDEGPSSAAAVQGGGSPPPLGIGSSGGGQLQGGIPDPSSLPLYNLPPNGGGGQVGHEALAWAHGRAPF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01622 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 183 IPR014476 GO:0003680
Lapu7g01622 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 110 IPR005175 -
Lapu7g01622 188 PIRSF ESCAROLA 1 188 IPR014476 GO:0003680
Lapu7g01622 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 121 - -
Lapu7g01622 188 ProSiteProfiles PPC domain profile profile. 1 130 IPR005175 -
Lapu7g01622 188 MobiDBLite consensus disorder prediction 117 169 - -
Lapu7g01622 188 FunFam AT-hook motif nuclear-localized protein 1 123 - -
Lapu7g01622 188 CDD DUF296 2 108 IPR005175 -
Lapu7g01622 188 Gene3D - 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01622 Lapu-Chr7 31812262 31813315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01622 1 188 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.212 1.06e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01622 - - var:108341460 313.923