Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01612 ATGGATCTTGCAAGCAGAAGATATTTGATTTATGCGTCACAACATGAGTCGCAATCACAAGCACTTTCTCCAGTCACAAGTCCAGCAGGGGGTTCATTCTTTCATCCTCATCAGCATTCTTCTAGCACCAGTTTCCCCATCATTGCAATTGCCATAATAGGAATAATGGCCACAGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACAGAATCGATATTCTAAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCATCACCAATGTACTCACCAGGCACAGAAGCTCGTGGACTAGATGAGGCAATGATCCGGTTAATCCCAGTGATTCAATACAAGACACAAGGGGATAGAGACTTTGGAGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTATGTAGAACAAGCATTTCCTTGACAAGCAGATTCCAAATGGATCAGCTTCTCGCCCTAAGATCTTCTTCCCCTCAGGATCAAACCCCACCTAGGGAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTAATTGAATTGGGCAATAACCATGATAGAAGCCAGAATTTGCAAGAGAGAGGAAACGTTTTGGAGGTACCGTTACCAACATCTCTTATTAGTCCTTCTACACCTAGGAAATTGGAACATGGAAATGTGCAGAAGAAAGCGATGAAACTGCATAAAGTGACCAGCATGGGGGATGAGTGTATTGATATTAGAGCAAAAGATGACCAGTTCTCAGTGCAACCAATCAGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTGCAGAACAGGCAAGTCAATGAAGTCAGCTCCACTGAAGGTTGCAGTGGTAGTGGTAGTAATAGAGTCAAGAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGAACCCTGA 1077 0.4318 MDLASRRYLIYASQHESQSQALSPVTSPAGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTEARGLDEAMIRLIPVIQYKTQGDRDFGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFQMDQLLALRSSSPQDQTPPRENLIGGDEDFVVIELGNNHDRSQNLQERGNVLEVPLPTSLISPSTPRKLEHGNVQKKAMKLHKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSSTEGCSGSGSNRVKRSFFSFGHGSRSRSSVQPVSLEP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01612 358 CDD RING-H2_EL5-like 130 173 - -
Lapu7g01612 358 SMART ring_2 131 172 IPR001841 -
Lapu7g01612 358 PANTHER RING-H2 FINGER PROTEIN ATL16 35 354 IPR044600 GO:0016567|GO:0016740
Lapu7g01612 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 178 IPR013083 -
Lapu7g01612 358 Pfam Ring finger domain 130 173 IPR001841 -
Lapu7g01612 358 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lapu7g01612 358 MobiDBLite consensus disorder prediction 338 358 - -
Lapu7g01612 358 SUPERFAMILY RING/U-box 120 179 - -
Lapu7g01612 358 FunFam E3 ubiquitin-protein ligase ATL6 97 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01612 Lapu-Chr7 31721919 31723573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01612 36 358 C3H Transcription Factor Family AT1G04360 55.211 2.00e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01612 - - gmx:100775286 586.26