Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01566 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACATCGAAGGAATCAAAACCCTTCAAAGAGAAGGTGCAGGCCTTGAGTGGAGGGACAAAGATGCGAAGACCCCTTTGATAGTGGCTTGTATGAATCCTCATCTTTTTAATGTTGCGAAAACTTTAATAGAACTTGGAGCCAATGTCAATGCGTATCGTCCTGGTCGTCATGGTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTGCTTCTTTCGCATGGAGCTAATCCTTTAATATTGAATGATGATTGTTTAACTGCTCTGGAGGTTGCCAGGGCCAAAGGGCACGGCAATGTTGTTCGTGCAATCGAGAGTCATCTATGCTTGTTCTCTGGTTGGTTGCGTGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCAGTTGTTATCGAAAAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGAAATCTTACAAAACCTTACAAGTTGGAGCTTGCCATATATTCTAATTTGCAGGACTCACGACCACGTACAGTTATTGCACTGTGGAAGGCCAATTTACAAGAACCAAAGCTGCACCAGTCTGATCCGTCAGTGACAATTGTTGATCATACTACTAAAACGCGCGTTAGACTTGGGCCTGCAAGTGAGAATGACAAGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCTCAGGCAAGTCCAACATTCTTGCAAAACAACGCGCCTACAGGTCCACCCACAGCACCACCAGCTGCAGAAGACACAGAGTTGGCTATGGCCATCAATGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCTTCCTTTCCTGATACACAACCAAACTTTGATGCAAGCTCTTCAAGCAGTGCAGTGAATACAGGCAATCATGGATTTCTTGGCACACCAAATTCAAATACAAGTGATAGTGAGTTGGTGCAAGAAGCTGACCCTGGTGGCAATGGTCAGCGACTCCAAAGCCATGTGAATGCTAGTGCTTTGGATTTCAATCCATCAGCTCCACCAATCGGCGGTGACATTCCAACAGATGGCCCCATTCAGTATCCATCTATTGATTCAAGCCCTGTTGATATGGCATCTTCAGATGTTGAGAAGCTTCCTAATGGAGAAGGAAAAACTGCTAGCGGAAGTGGCTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATTCCCTGTGGCCATGTTGCTGGATGCATGTCCTGCTTGAACGAGGTGAAAACAAAGAAATGGGGTTGCCCTGTCTGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA 1374 0.4556 MGQGQSKDELLYQQVSYGNIEGIKTLQREGAGLEWRDKDAKTPLIVACMNPHLFNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLSHGANPLILNDDCLTALEVARAKGHGNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLLSKKVWVVVLPVGSRNLTKPYKLELAIYSNLQDSRPRTVIALWKANLQEPKLHQSDPSVTIVDHTTKTRVRLGPASENDKQQLTWFSNACKGIPQASPTFLQNNAPTGPPTAPPAAEDTELAMAINASLQSAMQERPSFPDTQPNFDASSSSSAVNTGNHGFLGTPNSNTSDSELVQEADPGGNGQRLQSHVNASALDFNPSAPPIGGDIPTDGPIQYPSIDSSPVDMASSDVEKLPNGEGKTASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01566 457 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lapu7g01566 457 CDD RING-HC_XBAT35-like 402 455 - -
Lapu7g01566 457 SMART ring_2 406 444 IPR001841 -
Lapu7g01566 457 PANTHER ROLLING PEBBLES, ISOFORM B 398 454 - -
Lapu7g01566 457 MobiDBLite consensus disorder prediction 287 400 - -
Lapu7g01566 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 456 IPR013083 -
Lapu7g01566 457 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lapu7g01566 457 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lapu7g01566 457 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Lapu7g01566 457 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lapu7g01566 457 Pfam Ankyrin repeats (many copies) 42 96 IPR002110 GO:0005515
Lapu7g01566 457 Gene3D - 3 152 IPR036770 -
Lapu7g01566 457 ProSiteProfiles Zinc finger RING-type profile. 406 445 IPR001841 -
Lapu7g01566 457 SUPERFAMILY RING/U-box 405 451 - -
Lapu7g01566 457 Pfam Zinc finger, C3HC4 type (RING finger) 404 451 - -
Lapu7g01566 457 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Lapu7g01566 457 MobiDBLite consensus disorder prediction 287 352 - -
Lapu7g01566 457 MobiDBLite consensus disorder prediction 252 271 - -
Lapu7g01566 457 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01566 Lapu-Chr7 31155253 31160672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01566 396 454 C3H Transcription Factor Family AT3G06140 35.593 1.97e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01566 7 31155253 31160672 Lapu7g01566 7 31155253 31160672 ECH