Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01564 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGCCTGTTAAGATGTGGAAAGAGTTGCAGACTGCGCTGGATTAACTATTTGAAGCCTGATATCAAGAGAGGGAATTTCACAACTGAAGAAGAAGAAACCATCATTCAGCTGCATGAGGTGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCCGGAAGAACTGACAACGAAATAAAAAATGTGTGGCACACCAATTTGAAGAAGAGGATGCTGAAACCAGACCAGTCCAGTTCAAATTCCAGAATAGTCACAAAGCCAAAGATCAGACGTTCTGATTCCAATTCCAGCATCATAACTCAATCAGAACCTGCCAATTTTAATTTCAGAGAAATGGACTCAACATCAGCATGCACCACTTCTAGTGATTTTTCATCTGTCACGGTTGGTGACAGCAAAAATATCAAGTGTGAAGACATAGAGTCTCTGGAGACAATGCCCGTGATTGACGAGAGTTTTTGGTCAGAACCTGCAATCGATGAAACACCCTCCATGTCATCACAATCCATGACAATCTCAAATCAGATGCCACTTCAATACCCTTTTGCTAACTATGAGGAAACTTTCCAACAGAGTCATGTTTATGATTCAAACTTTGATGACGGCATGGATTTCTGGTATGACATATTCACCAGGACCGCTGATTCCATAGAATTGCCAGAGTTCTGA 804 0.4316 MVRAPCCEKMGLKKGPWAPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTTEEEETIIQLHEVLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRMLKPDQSSSNSRIVTKPKIRRSDSNSSIITQSEPANFNFREMDSTSACTTSSDFSSVTVGDSKNIKCEDIESLETMPVIDESFWSEPAIDETPSMSSQSMTISNQMPLQYPFANYEETFQQSHVYDSNFDDGMDFWYDIFTRTADSIELPEF* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01564 267 MobiDBLite consensus disorder prediction 119 141 - -
Lapu7g01564 267 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Lapu7g01564 267 CDD SANT 69 112 IPR001005 -
Lapu7g01564 267 Gene3D - 13 66 - -
Lapu7g01564 267 CDD SANT 16 61 IPR001005 -
Lapu7g01564 267 FunFam Myb transcription factor 11 67 - -
Lapu7g01564 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu7g01564 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu7g01564 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu7g01564 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu7g01564 267 SMART sant 13 63 IPR001005 -
Lapu7g01564 267 SMART sant 66 114 IPR001005 -
Lapu7g01564 267 Gene3D - 68 147 - -
Lapu7g01564 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Lapu7g01564 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu7g01564 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01564 Lapu-Chr7 31134227 31136855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01564 1 267 MYB Transcription Factor Family AT2G31180 47.826 1.58e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu7g01564 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01564 K09422 - gmx:100807569 478.018