Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01551 ATGGTTGGGTTGGAGCTCGTTCCCATAGGTACAATTTTGACAGTGGTAACCAAACAAGTCTTGAAAACAGCTCACGCAGCATCTGATATTCTTATTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATCGAGCCAGTACTAAGGGAATTGCAGCTTCAAGAACTGAATGACTCTCAAGCCGCAAGGGTTGCTCTGGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAATAATTTGGTGGACAAGTATAGGAACCGTGGTCGTTTTTACTTACTGATTAAGTGTCGATCCATTGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGAAAGTCGCTGGCTGCATTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCCGATCAGGTCAATAGATTGCAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCCCAGGCCCAGATTCAAATTGTTGACAAGTTGAACCAGGGACTTAAAGAGCAGAAACTAGATCAGGCTTTTGCAAATGACATGTTGGAAGAGATAGCAAGAGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCTAGCATTAGGAAGGAAAAAGAAGAAGCTTCTAAAGAGAAAGAAAGAGCTGAATGTGTTCTTTTGGATCAGATCATTCAGTTACTCTCTCGAGCTGATGCAGCAAGGGATTATGAAGAAGTAAAGAGGCAATACTTTGAAAGGGTTAAGGTGATAGAGAGATATGAATCAAGGGAAAAATATATCCCCCCACTCAATTCTTTCCTTTGCTCTATAACTGGAGCTGTTATGGAAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGACATGCTATTGAAGCTTGGTTTTACGATGGGAACAGGAAAGATCCCGAAACTAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCTCTAAGACTATCTATTGAAGAGTGGAGGGAACTTAACTATTGTTTGAGAATAAGGTCTATCAGGGAAAATTTATTATCATATTCTGACCTGCAAGAATCCCTGACCCAAATGCAGGAACTTGTAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACCGATAATGTTATCTCTATCCTTGGGAGCTCTGATGACAAAGAAGTGAAGATGAAGATTTTGATAACTTTGCAGGGTGCTGTGGAGGGGAATACAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCACATTCTTTCCTGCTTAGGGAGTGACTCTAGCCTTTCCAAGGCAGCAACTGATCTGCTATATGAACTGCTTCAAGAACAATCTGGTTGGAATCAAGATCTCTGTAAAAAGCTTTCTGAAAATCATACTGCAGTTTGGTCCCTTGTTGCTCTTCTAAAGAATCTTGCCAGCCATTCTGCCGAAGTAGCAGAAAAGATTTTGATGAAGCTTTTTGAACTAAACGAGGAAACCATTACTATTGCTGCTAATTTTGGCTGGTATAAACCACTTGCTGATCGCATGATTGCAAGACCGGATTCAAGAATATCAATGGCGAAAGCCATTGTCAATTTGGAGTTGAATGATTCAAACTTGAAACTCCTTGGCAAGGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCGGGAAGCATTGAATCAAAAGACTTGTCATTGTTAGCCCTGATTAAATTAGCAGGATCTCATGTTAATAAAGGAATTATTGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGACACGCACATTCATTATCATTAAATGCTCTGAAATCATTGACAGGCTTTCTTCACGTGGGGAAGGAATTGATTTCTTTGTTGATGGAGAGGGGAAACAACTAGAGTTAGATTCCATCATCACCAATGTGCTAGCTTTGCAGCAGAGTTCCAGCTTAGGTCCCAACATCCGTAAGCCTGCATTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTTACAGCTAATGGTGTATCTCTTATTCTTCCACTTCTTGATGATCCCGACTCAGAAATCAGGGAGACTTCCGTAATTATACTCTTCCTTTTCTCTCAACACGAGCCAGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAGAATGATAATGTACAGATGGCTGCTGCTGGTTTACTTGCTAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGTTCATTGAGCTGGGTGGACTTGATGCAATCATAAGCATTTTAAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGATTCACAGACCCTACAAATATTGAGTCACAGAGAGATTTGGTTAAACGCGGAATATATCCTTTGCTTGTTGATTTTCTCAACACCGGTTCAGTCACAGCTAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGTTATTCCCAAGCCAACCGGTTGCTGGCTCTGCAGATCGTCACGTGTTCCTTTGTGTCCAGCACATGGGAGTGTGTGCAGTGTGAACAGCACATTTTGTCTTTTGGAAGCTAAGGCTTTACCTGGCTTGATAAAGCTGTTACATGGGGAGGTTCATGCAACAGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAGAGTAATACAATAAGATACTTATTGGACATTTTGAACTGGGGAACTGATTCTCTCAAGGCAGAAGCTTTAGGACTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTCGAACACTATGGAACAACAGCTAGATCACGTCTAATTGGTTTGACTGGCATGAATATATATGGAGATGGTCACCTCAGGAGAAAGGCTGCCAAGGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTGGAATGA 3039 0.4149 MVGLELVPIGTILTVVTKQVLKTAHAASDILIGKESFKALSKHLFDIEPVLRELQLQELNDSQAARVALESLEADVKKANNLVDKYRNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQAQIQIVDKLNQGLKEQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEASKEKERAECVLLDQIIQLLSRADAARDYEEVKRQYFERVKVIERYESREKYIPPLNSFLCSITGAVMEDPVSLCTGTTCERHAIEAWFYDGNRKDPETKEVLEDTTLRSNIPLRLSIEEWRELNYCLRIRSIRENLLSYSDLQESLTQMQELVRENSINKDWISIGELTDNVISILGSSDDKEVKMKILITLQGAVEGNTRNKEKVAESQGWDHILSCLGSDSSLSKAATDLLYELLQEQSGWNQDLCKKLSENHTAVWSLVALLKNLASHSAEVAEKILMKLFELNEETITIAANFGWYKPLADRMIARPDSRISMAKAIVNLELNDSNLKLLGKEGVIPPLLEMLSGSIESKDLSLLALIKLAGSHVNKGIIAASGGVPLILDLMFSPRTRTFIIIKCSEIIDRLSSRGEGIDFFVDGEGKQLELDSIITNVLALQQSSSLGPNIRKPALRALLGICKFETGLVKKAILTANGVSLILPLLDDPDSEIRETSVIILFLFSQHEPEGVVEYLFRPRRLEALIGFLENENDNVQMAAAGLLANLPKSERELTMKFIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLTVIPKPTGCWLCRSSRVPLCPAHGSVCSVNSTFCLLEAKALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNTIRYLLDILNWGTDSLKAEALGLLEKVFVSKEMVEHYGTTARSRLIGLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01551 1012 SUPERFAMILY ARM repeat 352 665 IPR016024 -
Lapu7g01551 1012 Gene3D - 6 123 IPR036537 GO:0007166
Lapu7g01551 1012 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lapu7g01551 1012 SUPERFAMILY RING/U-box 249 331 - -
Lapu7g01551 1012 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lapu7g01551 1012 Coils Coil 127 154 - -
Lapu7g01551 1012 CDD MLKL_NTD 10 145 - -
Lapu7g01551 1012 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Lapu7g01551 1012 SUPERFAMILY ARM repeat 649 999 IPR016024 -
Lapu7g01551 1012 Coils Coil 62 89 - -
Lapu7g01551 1012 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 751 IPR000225 GO:0005515
Lapu7g01551 1012 CDD RING-Ubox_PUB 265 314 IPR045210 -
Lapu7g01551 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1004 - -
Lapu7g01551 1012 Gene3D - 510 845 IPR011989 -
Lapu7g01551 1012 SMART arm_5 534 573 IPR000225 GO:0005515
Lapu7g01551 1012 SMART arm_5 871 911 IPR000225 GO:0005515
Lapu7g01551 1012 SMART arm_5 712 753 IPR000225 GO:0005515
Lapu7g01551 1012 SMART arm_5 574 616 IPR000225 GO:0005515
Lapu7g01551 1012 SMART arm_5 798 838 IPR000225 GO:0005515
Lapu7g01551 1012 SMART arm_5 670 710 IPR000225 GO:0005515
Lapu7g01551 1012 SMART arm_5 406 445 IPR000225 GO:0005515
Lapu7g01551 1012 SMART arm_5 755 795 IPR000225 GO:0005515
Lapu7g01551 1012 Gene3D - 852 1008 IPR011989 -
Lapu7g01551 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 335 IPR013083 -
Lapu7g01551 1012 Coils Coil 197 217 - -
Lapu7g01551 1012 Gene3D - 349 504 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01551 Lapu-Chr7 30949832 30954387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01551 264 967 U-box Gene Family AT1G20780 27.984 1.46e-44 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01551 - - gmx:100783638 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01551 7 30949832 30954387 Lapu7g01551 7 30949832 30954387 ECH