Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01538 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGAAGCCCCCGAGAGCTTCCATGTGGCTCCTAGAATAATTGAAAACAACTTGGACTTTTCGAGGGCCGTCGTGCAAGCCCCAACGCCGGCGACGGAGGGGAAAAAGAAGAGAGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGGTGGCGTTGAGCCCGGTGGCAGCGCTTTCGCCGATGCCGATTTCATCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGGGGCAGAGGAAGGCCTGTTGAATCTATCAAAAAGTCATCGTTCAAGTTTGAGATTGAAAGCCCTGGTCAAGGTGATGGAATAGCATATTCAGTTGGTGCCAATTTCACACCACACGTGCTCACAGTAAATGCTGGCGAGGATGTCACTATGAAAATCATGTCCTTCTCACAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTCTAACATATGAGGGACGATTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGGGTTACAAGAAGCAGATCTGGTGGAATGAGTGTCTCTTTGGCTGGTCCAGATGGTAGAGTAATGGGGGGTGGACTTGCCGGTTTGTTGGTAGCTGCTGGTCCAGTTCAGGTTGTGGTTGGTAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGGGTGGAGCATATAACAACTATTACCCCTTCACCTGTTAATCTCGTCTCTGGTGAGGAACTAAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACTCCTGCTGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACTCATCTGCTGATGACAAAGATCCTTTACCCGACAAGGAGTCTAATCTAAGCCAATCAAACGCTGAGGCTGCATGCTAA 996 0.4759 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAVVQAPTPATEGKKKRGRPRKYGPDGKVALSPVAALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEIESPGQGDGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEHITTITPSPVNLVSGEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSSADDKDPLPDKESNLSQSNAEAAC* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01538 331 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Lapu7g01538 331 SMART AT_hook_2 47 59 IPR017956 GO:0003677
Lapu7g01538 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
Lapu7g01538 331 MobiDBLite consensus disorder prediction 298 331 - -
Lapu7g01538 331 ProSiteProfiles PPC domain profile profile. 122 264 IPR005175 -
Lapu7g01538 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 311 IPR039605 GO:0003680
Lapu7g01538 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 124 244 - -
Lapu7g01538 331 Gene3D - 127 260 - -
Lapu7g01538 331 MobiDBLite consensus disorder prediction 37 61 - -
Lapu7g01538 331 FunFam AT-hook motif nuclear-localized protein 1-like 127 258 - -
Lapu7g01538 331 CDD DUF296 126 240 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01538 Lapu-Chr7 30794891 30801219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01538 32 315 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 56.902 1.38e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01538 - - gmx:100789179 571.237