Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01521 ATGATGGTTGTCAGCGGAGGGAAGGGCCTCAAACGCGCTGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTCCCTTCTCCGTCCCTCGCCGAGGCAGAAAACTTCGCCGGCGGGCCCTTCCGCTCCAACGTTCGTTCCTTCCTGACGAAGCACGCGCTGCTTCCGCCGCCGTACGCGCTGTTCCCGCACCTGCTGACGTGGCAGATACTCTTCCGTATCGGCGAGCTCACCGAAGGCCCCGACTCTCCTGTTGTGTGCCTCGACGTTGTCGAGGAAGACGTCGCAAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATAAAAGCCGATGGAAGCTCTATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCTTGCAACCATGTGACTACTACTGATGATGTTGAAGACTGGGTGTACCACCAATTAGAGAACACGACTCATCTTTTACATGGCGTAGTCCATGCCAATGGATATGGGCACCTGCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACACCCATGGTATGGTGACTGGGGTTATAGATTTGGGTCTGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTGAAAACCTATCCAATCTACCCTTGTCCACCTTTTCCCAGGGACAGATGCCGATACCCCATTCTCGTGTACAGGACATGATAAAATATTTCCAGTCATTGTCCGAGCATGAGCTTGTAAATATAAGAGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCGCAAGAGTGTATCAAATGTTGATGACACAACCTGCAAGAAACGTCGTTTTGATGCTTCTGGACTGTCAATTTCTTGGGAGAAGACTGACATTGAGCGTGTGGAGCAAGCTATGATCAGAGTGCTGCGTGCAGTGTCCGAGTCTAAGTGGGTGAATTGGCGTGCTCTTAGGGGTGCGGCCTGTAAGGTGGGCTCTCCAGAGCTGCTGGATTATTGCCTGGGAGAACTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTCGAGGCTGCCACTGGTGCTTGCTATGGAATTTTGGCGAACAATAACTCCTCAGGGTCGAAGTATCCATCTGAAGAAAACCTTCTACAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGTTGAAGCAGGGACAAGGACTCTCGCGATGAGCTCAGTTCAAAAGCTTTTTGACTGCAAACAGTTTGTAAAAGATTATAGTCCTGAGTTGTTGCCATTGTCAGATTTGCACAAGTTACGCATCTCTTGTCAGGTTGAAATCGTGGATGAATGTGAAGATCCAGAAGCCATAGCTCCACCGGAATTAATTGTGCTGCCGATGAACGCCACCGTGGCCGAGCTTAAAAGTCAAGCAGCGAATGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGACGAGCTAGTAGGCTATAGCGGTGTTGAAGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTAGTTTGTGTCCGAGGAAGATGCATTGGGAAGAATGGGTTAAGTAAGTTCCGGATGGAACGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCGAAGGATGACGATGGGGAGAGAATGTTGGCGTGCGATATATGTGGAGTGTGGCGGCATACTAGGTGTTCTGACATCCATGATACTGAACCTGTTCCAGCACGTTTTGTTTGCCTCAAATGCCAAAACTCTGAATCAAAACTCAAATCTGGTGGCCACTGCAAAGATGAGACTGTGACTAACGTTAGCACGACTACTAGTTGTTTCGGAAAAGGCTTCCCTGTGCCATCTGATGTTAGTTAG 2139 0.4792 MMVVSGGKGLKRAAKKRVTADFYDFLTFPSPSLAEAENFAGGPFRSNVRSFLTKHALLPPPYALFPHLLTWQILFRIGELTEGPDSPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYRFGSGSYCLTHEAYKSAVENLSNLPLSTFSQGQMPIPHSRVQDMIKYFQSLSEHELVNIRDLFCFIMGLIGDARKSVSNVDDTTCKKRRFDASGLSISWEKTDIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEAATGACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRTLAMSSVQKLFDCKQFVKDYSPELLPLSDLHKLRISCQVEIVDECEDPEAIAPPELIVLPMNATVAELKSQAANAFQDVYLMFRRFQVDELVGYSGVEDSTQVKLLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTEPVPARFVCLKCQNSESKLKSGGHCKDETVTNVSTTTSCFGKGFPVPSDVS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01521 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
Lapu7g01521 712 CDD PHD_MMD1_like 628 673 - -
Lapu7g01521 712 SMART PHD_3 628 674 IPR001965 -
Lapu7g01521 712 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Lapu7g01521 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Lapu7g01521 712 Pfam PHD-finger 629 675 IPR019787 -
Lapu7g01521 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 16 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01521 Lapu-Chr7 30667613 30673060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01521 79 673 PHD Transcription Factor Family AT5G22260 31.024 2.92e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu7g01521 PHD 6.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01521 K26271 - gmx:100818189 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01521 7 30667613 30673060 Lapu7g01521 7 30667613 30673060 ECH