Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01484 ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGACCAGTTGTTCAGCCTCTACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTGAAGTTCGTGAAACTGCAAAGGTTCCCAGATCTCTTCGACGAAGACCATGGATTAATTATGGACAATATGAGAACCATTCAGATGAAGACTCTGACTGTGAGCGGCTTGATCAAAATTTGTCCTCAAGAGCATGTCTTCCTCGGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTCGCCAGATGGCGACCAGAAGATGCTCGTAGGCCACATATTGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCGTATGGAATTTGCCGCATCGTTCCACCGTCTTCTTGGAAACCCCCTTGTCCTCTCAGGGAAAAAAGTACATGGGAGGGTTCTAAATTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATGTCAAGGGTTCAAAGTAATATGAAGAGGAAAAGGAGAAGATGCACGAGAATGGGTGTGGATAATGGCACTAGAAGAGGACCTAATACAGGATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGGAGATTTTAAGCTCAAATACTTCAGAATAAATGAGAATGTATCTCCTTTGGGTGCCAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGAATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAAGTAGGTTCTGCTACACATGAACAGTACGTAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCACTTATGAAAGCAGTGATATATCTGGTGTTTTAGTGCCATGGTTGTACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGACCACCATTTATATTCATTGAATTACATGCACTGGGGAGCTCCAAAATTGTGGTATGGTGTCCCTGGAAAAGATGCCTGCAAATTGGAAGAGGCTATGAGAAATCATTTACCAGAACTTTTTGAAGAACAGCCCGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGTTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTACGGGCTCAATGGGAGCTTAATTTGCTGAAGAAGAATACTTCGGACAATCTACGATGGAAGGATGTCTGTGGAAAGGAGGGCCTGTTGGCAAAAGCACTTAAGATGCGTGTTGAGATGGAACGAACAAAAAGAGAATTTCTCTGCAGTTCTTCACAGGCATTAAAAATGGAGAGTACTTTTGATGCTACTGATGAAAGGGAATGCAACATATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTTCCCCGGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCTCTTGGGATTCCAGATTTTTCCTCTTTCGGTATGATGTTAGTGAACTAAATATTCTCGTGGAGGCATTGGAAGGAAAATTAAGTGCAATATACAGATGGGCAAAATCAGATCTTGGGCTGGCTCTATCATCTTATGTCTCAGCAGGCAAGGAAACAATAATTAAAGAATTGAAATCACATTCATCCAATTTGTCTCATTCTTCAAGGGCAACTTTGCATAAAGAGATGGCTTTGCATCAACCAAATAAATATATTGATGACTCTCAATTGATTGATGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCTGAAGCTATTTCATCTTTGGGTTCAATGAAGGAATTGCTAGCATTTAATAGCTCAAAACCTGCAACATCTGAGATGCCTAATCATAAGATCTGTGTTGGTAAAGAAGAATCTGTTATTTGCAGATCAAAGATGAAAACACCCGGTTGTCAATTGTCTCAAGAGGATACATCATATGCTTTATCTACTCTAGCTCAACAAGGAGGTGAGAAAAGTTCACTCTACATGCATAACAATATTATACTTCTTAGTGACGATGAAGATGACAGAAAGTTGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTCTGCTTGTAGGCCCTGGAGATAGGACAAGCCCATGTAACAATATAGAAAATACAAACTTTACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAAAGATGGTATTAGATTACCCCATGAAAATATGAGATCTGATTCAATTCGGCCTTTGCATGTGAAACAAGAATGTCATGAACACACAGGAACTGTTCTAGCCTGTACCCCAGTAGATCTTTCGTGTCATATGGGTCTTACAAGTGCAGAATGCACTAAAAATGTTTCAGCTCCGCCAAAAGTTGAAGCAAGTGATCATGGTTTGGAAAGTTTGGAGATTTGTCCTCTGAACCCACAACTTTCTGGCACTAAGGTCAAGACTGAAGATAATCACGAAAAGTTTGGAGGATGTGCCACTTCTAATGTATCAGACAATGCAAGAGCTGTTAATGGGAACTTTTCTTGTGGTCCAAACAATTACCGACAGAAAGGTCCTCGGATAGCGAAGGTTGTTCGGCGCATCAACTGTAATGTTGAACCATTAGAGTTTGGAGTTGTGCTTCCTGGAAAGTCTTGGTGTAGTAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTCAGATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTCGGAAAGTTGTCCAAGTGAGGTCTTCATCCATATGTCAGCTGCAAGATGCTGGGAGCTTGTCAGAGAGAAAGTGAATCAAGAAATTGCAAAGCAACATAAGCTGGGAAGAAAGGGCCTTCCTCCTTTACAGCCCCCTGGTAGCCTTGATGGCTTAGAAATGTTTGGGTTTTCTTCACCGGCGATAGTGCAGGCTATTGAGGCGCTGGATCGAAGTCGAGTGTGTAATGAATATTGGGACTCACGGCCCTACTCCCGTCCTCTAGGACAGATTTCACAATCATGCCAAAGCAATGTGAGTGGTGGAAATGGTGAAGGGGTTCTCTTGAATAAGCACATTCCCCTTGAAGTTGTTGCAGTATTAAGGAGCCTATGTAAAAAGGCTACTGCAGAAGAATTGAACTCGTTGTACAGCATTCTTAGTGAAAGTAGGCCACAGGCTGACAGGAGCCAAATTGCGCAATTTCTTAAAGAAGAGATTCACAAATCACAACCGCCCTAG 3774 0.4173 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMTSCSASTSASESPSTQVENDVEVRETAKVPRSLRRRPWINYGQYENHSDEDSDCERLDQNLSSRACLPRGVIRGCPDCSNCQKVVARWRPEDARRPHIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLREKSTWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNTGFCEVERFGFEPGPEFTLETFQRYAGDFKLKYFRINENVSPLGANTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQVGSATHEQYVKSGWNLNNFARLPGSLLTYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDACKLEEAMRNHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTSDNLRWKDVCGKEGLLAKALKMRVEMERTKREFLCSSSQALKMESTFDATDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSRFFLFRYDVSELNILVEALEGKLSAIYRWAKSDLGLALSSYVSAGKETIIKELKSHSSNLSHSSRATLHKEMALHQPNKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEAISSLGSMKELLAFNSSKPATSEMPNHKICVGKEESVICRSKMKTPGCQLSQEDTSYALSTLAQQGGEKSSLYMHNNIILLSDDEDDRKLSDSNRRKELSSLLVGPGDRTSPCNNIENTNFTISVTDTAVMGEKDGIRLPHENMRSDSIRPLHVKQECHEHTGTVLACTPVDLSCHMGLTSAECTKNVSAPPKVEASDHGLESLEICPLNPQLSGTKVKTEDNHEKFGGCATSNVSDNARAVNGNFSCGPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLPGKSWCSSQAIFPKGFRSRVRYINVSDPSSMCYYISEILDAGRGWPLFMVSSESCPSEVFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGLEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPLGQISQSCQSNVSGGNGEGVLLNKHIPLEVVAVLRSLCKKATAEELNSLYSILSESRPQADRSQIAQFLKEEIHKSQPP* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01484 1257 SMART JmjN_1 147 188 IPR003349 -
Lapu7g01484 1257 SMART cupin_9 360 523 IPR003347 -
Lapu7g01484 1257 Pfam F/Y-rich N-terminus 1035 1078 IPR003888 GO:0005634
Lapu7g01484 1257 SMART fyrc_3 1087 1181 IPR003889 GO:0005634
Lapu7g01484 1257 SMART fyrn_3 1037 1081 IPR003888 GO:0005634
Lapu7g01484 1257 SUPERFAMILY Clavaminate synthase-like 354 550 - -
Lapu7g01484 1257 FunFam Putative lysine-specific demethylase JMJ16 1029 1167 - -
Lapu7g01484 1257 ProSiteProfiles FYR domain FYRN motif profile. 1023 1081 IPR003888 GO:0005634
Lapu7g01484 1257 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Lapu7g01484 1257 Gene3D Cupin 133 507 - -
Lapu7g01484 1257 MobiDBLite consensus disorder prediction 36 75 - -
Lapu7g01484 1257 Gene3D - 1030 1167 - -
Lapu7g01484 1257 ProSiteProfiles FYR domain FYRC motif profile. 1083 1173 IPR003889 GO:0005634
Lapu7g01484 1257 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Lapu7g01484 1257 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Lapu7g01484 1257 MobiDBLite consensus disorder prediction 45 67 - -
Lapu7g01484 1257 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 1161 - -
Lapu7g01484 1257 Pfam jmjN domain 149 182 IPR003349 -
Lapu7g01484 1257 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Lapu7g01484 1257 Pfam F/Y rich C-terminus 1086 1169 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01484 Lapu-Chr7 30246860 30258431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01484 2 1252 JUMONJI Transcription Factor Family AT1G08620 55.008 0.0 1253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu7g01484 JmjC 8.8e-46 CL0029