Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01475 ATGGAGAAGAAGAAGCTCAACCTCATCGTCCCTAATCCTCAACCTCATGGAATCATTCCACGCCGCAATTCTCCTATCTCTCAAGGACAAGATTCACTGTGGATGATGAATTTAAGGACTGGCGAAACAATGGATTCTGAAGCTTATCCGGAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCCATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAACCACATGCAAATTTCATCATCCTAAAGACCTGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCACTCCGACCTGATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACAGGATTCTTCTGTTTACCCTACCGTCCATTCTCCAACTACACCTGGTCAGCAGTCGTATGCTGGAGGAATTACAAATTGGTCAAGGGCATCATACATTCCCAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAGTTCTTCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGACAGTATTCAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACACAGGATCTCATGGAGCATATTCTCAATTCCGTTCTGGCACTGCTCCAGTAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGCGCAGTATGTCGGTTCCACCACCCACGCGAAAGACTCATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAGTTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATCTCTGCATCGCCTTCAGCTGATGCCCCGAGCAGGCATCTGCTACGATCTTCACCAGGAACTGCTGCGTTAAATTTATCTTCCGAAGGACTTGTTGAGTCAAGCTCAGCAACACCCAGGCGGCTTTCTTTATCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGGATGA 1335 0.4592 MEKKKLNLIVPNPQPHGIIPRRNSPISQGQDSLWMMNLRTGETMDSEAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGTTCKFHHPKDLAGIAGRVALNTLGYPLRPDEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSYAGGITNWSRASYIPSPRWQGPSSYAPLVLPQGVVSVPGWSAYSGQMGSISTSDSIQQAMRNGQTYGTSRQGELANTGSHGAYSQFRSGTAPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADAPSRHLLRSSPGTAALNLSSEGLVESSSATPRRLSLSETRQIPSGDDDIDDDG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01475 444 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Lapu7g01475 444 Gene3D - 130 180 - -
Lapu7g01475 444 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Lapu7g01475 444 MobiDBLite consensus disorder prediction 409 444 - -
Lapu7g01475 444 SUPERFAMILY CCCH zinc finger 353 377 IPR036855 GO:0046872
Lapu7g01475 444 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Lapu7g01475 444 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Lapu7g01475 444 SUPERFAMILY CCCH zinc finger 57 80 IPR036855 GO:0046872
Lapu7g01475 444 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Lapu7g01475 444 PANTHER PROTEIN PHOSPHATASE RELATED 41 396 - -
Lapu7g01475 444 MobiDBLite consensus disorder prediction 409 433 - -
Lapu7g01475 444 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Lapu7g01475 444 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Lapu7g01475 444 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Lapu7g01475 444 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Lapu7g01475 444 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Lapu7g01475 444 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Lapu7g01475 444 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Lapu7g01475 444 FunFam CCCH type zinc finger protein 302 387 - -
Lapu7g01475 444 SUPERFAMILY CCCH zinc finger 101 125 IPR036855 GO:0046872
Lapu7g01475 444 FunFam Zinc finger nuclease 2 51 128 - -
Lapu7g01475 444 Gene3D - 50 127 - -
Lapu7g01475 444 Gene3D - 302 383 - -
Lapu7g01475 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Lapu7g01475 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Lapu7g01475 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Lapu7g01475 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Lapu7g01475 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 377 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01475 Lapu-Chr7 30127807 30133188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01475 33 443 C2H2 Transcription Factor Family AT3G02830 60.238 3.65e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu7g01475 zf-CCCH 5.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01475 - - ccaj:109816515 804.283