Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01459 ATGGCCATTAAGGAGGAGGAACAAGTATCCGCACTGAAGCAAAAGTTGCGGGCATTGATCGAGAGTATCGTGGACAGTGATGATTACACTGTTCAAGCTGCGGACAAGGCTATCCATGCTCTTTCTGTCCTCAAGGATTTGAAATGCACCACTTCTCTCTCAACCAACTTTCACGTCACACCCGTCCCTCCACACTTTCGATGCCCTCTCTCTGATCACTTGATGACAGATCCTGTTATCTTGACCACTGGAAAGACCTTTGATCGTCCATTCATCCAGAAGTGGCTGAATGAGGTCCACGGATTTTGCCCTCTGACCCAACAAGTTCTCTCTCACTGTATTCTCACTCCAAATTTCTTGCTCCAAGGCATGATTTCAGAGTGGTGCAAAGAGAACGGAGTTGACCTACCAAAGCCCGTTTTTGACATTCGAGACGAACAACTAACCGAGGCGCACAGACACCGTTTGCGTTCACTGCTCTTCAAGCTGTCACTGTCAGTTGATGAACAGAAAGAAGCTGCGAAAGAGCTTCGTGAGTTAGCAAATCGAATGTCCGCAATTCGAACACTCCTCGGGAACTCACAAATGATTCAGCTTTTGATTCGTCCATTATCACCCGGCACAGCTTCTGTGGATCCCGATCTCCACGAGAATTTGATCGCAACTCTTCTAAGTCTCTCACAAAACGATGCCAACAAGAGGGTGCTCGCTGAAAACGAAAAAGTCATCGCCCTTCTCATTGATTCATTGAAGTCCGGAACACTTCAAACAAGAAGCAATGCAGCTGCAACTTTTTCCTTAATGTCAAATCTTGAATCAAACAAGCACATAATTGGAAAATGTGGAGCTATAAAATACTTGGTGGATTTACTAGAAGAGGGAGACCCGTCAGCCATGAAAGATGCTGTGTCAGCCTTGTTCAAACTATGCTTTGCGCGTGAAAATATAGCGAGGACCGTACGAGAAGGGGCAGTGCAGATTATTCTTGGCAAGATCGTTGACCAGGTTCTTGTTGATGAGTTGATGTCACTGTTGGCACTTCTCGCTACACATACTAGGGCCGTTGAAGCGGTGGTGAATCATGGTGGTGTCCGTTTCTTGCTTGATATCTTGAGGGAGAACACAGAAGAAAGCATCAAGGAAAACTCTGCTGTAATTCTAAATCTAATCTGTTACCATTGCAGAGATAAAAGGCTAGAAATTAGAGAGGAAGAAATGGCCCACGGCACACTCTCTAACCTTACTCAAGACGGGACCGCAAGGGCTAAAAGGAAAGCTTCCTCCATCCTTCACTGTCTTGGCATAGATCCATCCACTAGGCAAAACGCTACAACAAAATTTTGA 1344 0.4561 MAIKEEEQVSALKQKLRALIESIVDSDDYTVQAADKAIHALSVLKDLKCTTSLSTNFHVTPVPPHFRCPLSDHLMTDPVILTTGKTFDRPFIQKWLNEVHGFCPLTQQVLSHCILTPNFLLQGMISEWCKENGVDLPKPVFDIRDEQLTEAHRHRLRSLLFKLSLSVDEQKEAAKELRELANRMSAIRTLLGNSQMIQLLIRPLSPGTASVDPDLHENLIATLLSLSQNDANKRVLAENEKVIALLIDSLKSGTLQTRSNAAATFSLMSNLESNKHIIGKCGAIKYLVDLLEEGDPSAMKDAVSALFKLCFARENIARTVREGAVQIILGKIVDQVLVDELMSLLALLATHTRAVEAVVNHGGVRFLLDILRENTEESIKENSAVILNLICYHCRDKRLEIREEEMAHGTLSNLTQDGTARAKRKASSILHCLGIDPSTRQNATTKF* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01459 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 135 IPR013083 -
Lapu7g01459 447 CDD RING-Ubox_PUB 63 112 IPR045210 -
Lapu7g01459 447 PANTHER U BOX DOMAIN-CONTAINING 11 432 - -
Lapu7g01459 447 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Lapu7g01459 447 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Lapu7g01459 447 Gene3D - 154 445 IPR011989 -
Lapu7g01459 447 SMART arm_5 270 311 IPR000225 GO:0005515
Lapu7g01459 447 SMART arm_5 351 392 IPR000225 GO:0005515
Lapu7g01459 447 Coils Coil 167 187 - -
Lapu7g01459 447 SUPERFAMILY RING/U-box 56 138 - -
Lapu7g01459 447 Coils Coil 2 22 - -
Lapu7g01459 447 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Lapu7g01459 447 SUPERFAMILY ARM repeat 166 440 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01459 Lapu-Chr7 30018906 30020474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01459 124 430 U-box Gene Family AT3G07360 47.923 5.96e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01459 - - gmx:100806132 558.91