Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01426 ATGGAGGGAAAAGCTGAGGATGAAGTGGTGGATATTGAGAGTTCTTCCAGTGGTTCTTTCAATGACGATTCAGATGATGAGGAATCTTTAGTTCCTGAAATAGATGATGGAGTGCAGCTTGAGGATCCGTTAACAGAAGAGGAAATCCAAGATCTTATTTCTGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAACTGAAGCAAAATCTTCAGGGGGATGATTTGGAAACTGCTGTCGCTAATGAGATGGCTACTTTTAAAGAAGAATGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATCGAACTTCCTAGCCTTTATAAGTTGATAGAAAAAGAAGCTCCTAATGTTTGCTCCACTGAAGCTTGGAAAAACAGGAATCACTGGGTTGGCTCTTTGGCAACTTCTGAAATTGCTGAGTCAATTGCTAATGCTGAGAAGCATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTTGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACACAGGAGCCAGTGAAGACCGAAACTGAGGGGGATTGGGATGTGTTCAATAAAATAGTTTCTGATGGGAGCGGCATTGATGCTTCATTTGGCAGTAAGCACTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGACGTCGATGGCAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAGTGAAAGAGAATTAGATCTTTCAGACGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATAAGAAACTTCAAATCCATTTGAAACATAGGAGGCATAGAAAGATAAATAAACAGCGAGAAATGAGCACACCTATCCCGTTGACAGAGAGCTCTACTCAGAAGCTTTCATATGCTGATCATTTAAATCCTGTGAGAAAAGAAGGAACTAGTGATGATGGGAAAATAGTGTTTGACAATGACAAGGATATATGCGTTCTTATGGAGACTGATAATATTAAAGGTTTTGATGTCAGTCATCATCATGACAAGGAAAAGCTTACTAGTACTGGTGGCTTGTCAGATCCACCCAATTCCTCAGTGGATGATGTTATGGAACAGAGAGGAATCAAACGTGTAAGCAGTGGTGAGCTTGATGCTGACAGTAAAAAATCTCGTCTTGTTATTGATAGTGATAATGAAGCAGGTGTTAGTAAGGAGAAATTAGATCGCAATACTCAAGAACTCAAAGAAGATTTATGTAACAAAGGTACTGGTTCTCTTCCTTCAGAGTCTCTGGATGAAAAATTTTTGTGCACAGTTTGTGATAAAGTGGCTCTTGAAGTGCATCCACATCCTCTCCTGAAAGTAATTACTTGTGGAGATTGCAACCGCTTAATAAAAGAAAAGACACTTCAAAAGGATCTGGGGCAAGATTGTTCGAAGGGTTACTGTACATGGTGTGGAGGAAACCGTGAATTAGTTAGTTGTAAATTATGCAATGTTTTATTCTGCAGCAAGTGTTTAAAGAAGAATCTTGGTATAGAATTGGTTTCTGGAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGCCATCCAAATCTTTTGCAAAGACTGTCCATGCAACTAGAGAAAGCTGTAGGCTCTGCTAGTATATTAGTTTCTAGTTCTAGTAGTGATTCTGATGATTCAGACGATTCAGATGATTCAGATGATTCAGATTATTCAGATGATTCAGATGCACAGATTAACGTTACAATGAGCTCCAAGCGAAGACAAAAAAAGAAGATTCGCAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGAAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGGGCAGTTTTCTGCTTCGTCAATTGAGATGAGTTCTGACGGGTGTAATGGGAATTTGTCAGAAGGTGCAAGCGTTGAAGTTCTTGGTGATTCACTAGCAGGTTATATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCGCATCAGATATCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATCTGGGGTTAAGAACTGCACTTATAGTCACGCCGGTCAACGTGCTACATAATTGGCGGCAAGAGTTCATTAAGTGGAGACCTTCTGAGTTGAAGCCACTGAGGGTCTTCATGCTGGAAGACGTGCCAAGGGATAGAAGGGCGGAATTGCTTAAAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATACAGCTTTCCGAAATTTGTCTTTCGGGAAGCATGTGAAAGATCGGAGCATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGTCCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACTCAAGCGTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCCCTTCAAAACAATCTCATGGAATATTACTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAATCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGACTGATGTGAAAATTATGAACCAGAGGTCTCACATCCTCTATGAAGAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTGCCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTGCAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGAGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGCCAAGGATTATGCAAAAGACGAAGATGCTGTCGAGAATTTTCTTGTGGATGACAGTTCTAGTGACGAAAATTCTGATTATAATGTTCTTGCTGGAGAGAAGATGGGGTATGCAAATGAGTTGCTGCAAAACAAAGATGGTAATGGCTATTTCCTGAAGGGTTGGTGGAATGACCTTCTTCACGGAAAAATATATAAAGAGATTGATCACAGCGGCAAAATGGTTTTGCTGATGGAGATACTAACTATGAGTTCTGATGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACACGGAAAACGAGGAAAGTTTTGGAAGAAGGGGAAAGATTGGTACAGGTTGGACGGAAGGACATTGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAACGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCCGAGCTGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCGACATATGATCTCCAGGCTATCTATCGATCATGGAGGTACGGACAGAAAAAACCTGTATTTGCTTATCGATTGCTAGCTCATGGAACTATGGAAGAGAAGATATACAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGGCAGCAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAATTAGGTGATGATGACAACCCTGTGACTTTAGGCGATCTAGGTCAAGAAAATGGGCATCAAGAGAACCCAATTTTGGTTGGGCATTCTCTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCGTGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTGCAAGAAAATGAAGAGGAAAAACTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAATCCCTGGAATGGGAAGAAGTCCAGAGAGTACCACTAGGTGAGTCTATTGTGCCTATTCAGAAACCAGAAATTCCAAATGATGTGCCCCACGTAACAGAAACCTTGAACATCTTGCCAAATAAACTAAGCCGACGTTTCGCGTCACGGAAATGCACCAACCTTGCGCACATGTTAACACTTCGAAGCCAGGGAACAAAGTTCGGTTGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATCAGGTGGGAAGACTTGAAGAAGAGATAG 4491 0.4142 MEGKAEDEVVDIESSSSGSFNDDSDDEESLVPEIDDGVQLEDPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVANEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEKEAPNVCSTEAWKNRNHWVGSLATSEIAESIANAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKTETEGDWDVFNKIVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIASERELDLSDEQRRQFKKVKEEDDAIVDKKLQIHLKHRRHRKINKQREMSTPIPLTESSTQKLSYADHLNPVRKEGTSDDGKIVFDNDKDICVLMETDNIKGFDVSHHHDKEKLTSTGGLSDPPNSSVDDVMEQRGIKRVSSGELDADSKKSRLVIDSDNEAGVSKEKLDRNTQELKEDLCNKGTGSLPSESLDEKFLCTVCDKVALEVHPHPLLKVITCGDCNRLIKEKTLQKDLGQDCSKGYCTWCGGNRELVSCKLCNVLFCSKCLKKNLGIELVSGTQATSWHCCCCHPNLLQRLSMQLEKAVGSASILVSSSSSDSDDSDDSDDSDDSDYSDDSDAQINVTMSSKRRQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSSDGCNGNLSEGASVEVLGDSLAGYIVNVVREKGEEAVRIPPSISAKLKAHQISGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVPRDRRAELLKKWRAKGGVFLIGYTAFRNLSFGKHVKDRSMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEELKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQEHPEMLRKRCFFAGYQALARIWNHPGILQLTKEAKDYAKDEDAVENFLVDDSSSDENSDYNVLAGEKMGYANELLQNKDGNGYFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRHGKRGKFWKKGKDWYRLDGRTLSSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFELGDDDNPVTLGDLGQENGHQENPILVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPWWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIVPIQKPEIPNDVPHVTETLNILPNKLSRRFASRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR* 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01426 1496 CDD SF2_C_SNF 1131 1274 - -
Lapu7g01426 1496 MobiDBLite consensus disorder prediction 1 42 - -
Lapu7g01426 1496 Pfam SNF2-related domain 758 1058 IPR000330 GO:0005524|GO:0140658
Lapu7g01426 1496 CDD ADDz_ATRX 484 582 - -
Lapu7g01426 1496 SMART ultradead3 731 952 IPR014001 -
Lapu7g01426 1496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 757 940 IPR014001 -
Lapu7g01426 1496 SMART helicmild6 1173 1263 IPR001650 -
Lapu7g01426 1496 PANTHER RAD54-LIKE 16 1494 IPR044574 GO:0016887
Lapu7g01426 1496 Gene3D - 1000 1338 IPR027417 -
Lapu7g01426 1496 Coils Coil 107 127 - -
Lapu7g01426 1496 MobiDBLite consensus disorder prediction 20 42 - -
Lapu7g01426 1496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1143 1311 IPR001650 -
Lapu7g01426 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1324 IPR027417 -
Lapu7g01426 1496 Gene3D - 708 989 IPR038718 -
Lapu7g01426 1496 Coils Coil 1379 1399 - -
Lapu7g01426 1496 Coils Coil 49 76 - -
Lapu7g01426 1496 MobiDBLite consensus disorder prediction 398 419 - -
Lapu7g01426 1496 Pfam Helicase conserved C-terminal domain 1139 1263 IPR001650 -
Lapu7g01426 1496 MobiDBLite consensus disorder prediction 603 640 - -
Lapu7g01426 1496 ProSiteProfiles ADD domain profile. 476 608 IPR025766 -
Lapu7g01426 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 721 989 IPR027417 -
Lapu7g01426 1496 MobiDBLite consensus disorder prediction 610 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01426 Lapu-Chr7 29713166 29742810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01426 660 1316 RAD5 or RAD16-like Gene Family AT5G43530 23.462 6.86e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu7g01426 SNF2_N 1.4e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01426 K10779 - gmx:100794911 2567.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01426 7 29713166 29742810 Lapu7g01426 7 29713166 29742810 ECH