Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01414 ATGTCCACTGCAGCGCAACCCAAGGCTAAGAAAACAGCGGCTGCCAAGAAGCCCCTCTCCCACCCTCCCTTTGCCGTGATGATAGCGGAGGCGATTACCAGTCTGAAGGAGAGAACTGGTTCGAGCCAATATGCAATAACCAAGTTCATTGAAGGGAAGCATAAGGAGTTGCCTCCTACATACAAGAAACTTGTCCTTGTCCATCTCAAGAAGTCTGTTGCTTCTGGCAAGCTTGTGAAGGTTAAGAACTCCTTCAAACTTGCCCCCACTAAATCTGCCCCGGTCAAAGCTGCTGTTGCTGCTCCTAAGAAGCCCAAGCCTGTTGCCAAGCCCACCGCCAAGGCTGCTGCCAAGCCAAGGGCTGCTCCAAAGAAGAAGGCTGTGGCAAAGCCCAAGGCTAAGACTGCGGCGGCAACTGCCAAGCCCAAGGCCAAGCCTGCTAAGGCCGCAGCCAAGAAAGTTATTACCAAGGCCGCTAAGAAGACTCCTGTAAAAGCTGTGAAGAAGCCTAAGACCGTGGCGAAGAAACCCAAGAGCGTGAAATCCCCAGCCAAAAAGGCCAAGAAGTGA 570 0.5281 MSTAAQPKAKKTAAAKKPLSHPPFAVMIAEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHLKKSVASGKLVKVKNSFKLAPTKSAPVKAAVAAPKKPKPVAKPTAKAAAKPRAAPKKKAVAKPKAKTAAATAKPKAKPAKAAAKKVITKAAKKTPVKAVKKPKTVAKKPKSVKSPAKKAKK* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01414 189 CDD H15 20 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g01414 189 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g01414 189 PRINTS Histone H5 signature 113 127 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g01414 189 PRINTS Histone H5 signature 143 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g01414 189 PRINTS Histone H5 signature 165 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g01414 189 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g01414 189 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu7g01414 189 PANTHER HISTONE H1 5 178 - -
Lapu7g01414 189 MobiDBLite consensus disorder prediction 92 189 - -
Lapu7g01414 189 Gene3D - 15 107 IPR036388 -
Lapu7g01414 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu7g01414 189 MobiDBLite consensus disorder prediction 146 189 - -
Lapu7g01414 189 SUPERFAMILY "Winged helix" DNA-binding domain 16 91 IPR036390 -
Lapu7g01414 189 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01414 Lapu-Chr7 29544300 29545635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01414 11 88 Single Myb Histone (SMH) Gene Family AT5G67580 35.897 2.54e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01414 K11275 - gmx:100810590 144.436