Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01409 ATGGTGTCGAGCCAGGTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCGTAACTTCTACAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGAGAAACTAGCGGATGAGGAGATGGATTGTTGTCCTGTGTGCAACATTGATCTAGGCTGCCTTCCGGTGGAAAAGCTCAGGCCAGACCATAATGTGCAAGATTTAAGGTCAAAAATATTCCCGTTTAAAAGAAAAAAAATCAAGGCCCAAGAAGTTGTGTCTTCAATATCATTGCCTGCTAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCTGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTTGAAGAATCCATAAAGAAGGAAGAAACAAATGGTGAAGATAATACGGATTCTTCCATGGCTGAGCCTTCTAAAAAGCATAAGCCAAATGAAGATAAAGAGAACAGTGTGGATCATGCAGAAGGGAAGGTTGATCTCTGGACACCGCTGAACTGTCTTGTCGAAGCTGCCAACAGAACAAAGTCCTCTAGGTCAAATTCACAAGCAACTCCTCTTGCCAAATTAGAGTCCCCAATTACTCCTCATGGTGGACAAAATATACCTGAAATTAAAACCAAAACAGATCTACCTGCTTCTGTCCATAGTGAATTAAACATTCCAAAATCCAAAAATAAGGATACTGGACATAAAACAATATTTGGGGATGACAAGGATGCAAACAGCTTGCCTTCAGGACCAGTGAAGCGAAGAAGGTTGCGTCCGGCTGGTCAGAAAAGAGTTGCGGCATCTGAGATGTCTGCCTCATCCCCTGCTCCACTAAATGCAACAGGGGGCAAGTGCAACAGAAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCGGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCCATCTCATTTATTCAGAAGTACCTTGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATATTGTGCCGGGGTCAGCCAGTGCTCCCATCATTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCATCAACCTCGAAAAGGCTACCAGCATCAGTGGGGTCCTCGGCCAAAGATTTTGTGATGGTCTTATCGTATTGTCGAAAGGCCTTGCCCCCTTGA 1299 0.4373 MVSSQVVKVKRDTLRPCMTCPLCRNFYKDATTISLCLHTFCRKCIYEKLADEEMDCCPVCNIDLGCLPVEKLRPDHNVQDLRSKIFPFKRKKIKAQEVVSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAALRGCSFLLEESIKKEETNGEDNTDSSMAEPSKKHKPNEDKENSVDHAEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKLESPITPHGGQNIPEIKTKTDLPASVHSELNIPKSKNKDTGHKTIFGDDKDANSLPSGPVKRRRLRPAGQKRVAASEMSASSPAPLNATGGKCNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPISFIQKYLVKKLNLSSEAEVEILCRGQPVLPSLQLHNLVDLWFRTASTSKRLPASVGSSAKDFVMVLSYCRKALPP* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01409 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Lapu7g01409 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Lapu7g01409 432 SMART ring_2 20 60 IPR001841 -
Lapu7g01409 432 MobiDBLite consensus disorder prediction 255 314 - -
Lapu7g01409 432 SUPERFAMILY RING/U-box 14 85 - -
Lapu7g01409 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Lapu7g01409 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 430 IPR044807 GO:0004842
Lapu7g01409 432 MobiDBLite consensus disorder prediction 208 236 - -
Lapu7g01409 432 CDD RING-HC_PCGF 18 61 - -
Lapu7g01409 432 MobiDBLite consensus disorder prediction 208 224 - -
Lapu7g01409 432 MobiDBLite consensus disorder prediction 299 314 - -
Lapu7g01409 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Lapu7g01409 432 MobiDBLite consensus disorder prediction 155 191 - -
Lapu7g01409 432 MobiDBLite consensus disorder prediction 256 273 - -
Lapu7g01409 432 Gene3D - 310 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01409 Lapu-Chr7 29514381 29519407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01409 1 351 C3H Transcription Factor Family AT2G30580 44.173 1.43e-85 263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01409 7 29514381 29519407 Lapu7g01409 7 29514381 29519407 ECH