Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01405 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGTGCCTCTGCCAGTGATCATGGCGAGTTAACGTTGAAGCCCACTGCTGGCAAGAGAGGTTTCTCTGAAACTGCTTCTGTTGATTTGAAGCTCAATCTTTCTTCCAATAACGACTCTGCCTCGGCTTCACCGGCTACAGAGAACCCCAAAGACAGCACTACTACACTTGAACCTCCTCCTCGGGCTAATGACCCAGCAAGACCACCTGCAAAGGCACAAGTAGTGGGTTGGCCACCGGTTAGATCTTTTAGAAAGAACATAGTGAATGTTCAAAGGAGCAACAATGAAGAGGGTGAGAAGAGTGGAGGAGCAGCATTTGTGAAGGTGAGCATGGATGGTGCGCCTTACCTACGGAAGGTGGACATAAGGTTGTACAAGAGCTACCAAGAGCTGTCGGATGCGCTGGCCAAGATGTTCAGTTCCTTCACAATTCAGAAGTGTGGGTCCCAAGGGATGAAGGACTTTATGAATGAGACCAAATTGATAGACCTTTTGAATGGCTCTGATTATGTGCCCACATATGAAGACAAGGACGGAGACTGGATGCTGGTCGGCGATGTTCCCTGGGAAATGTTTGTTCAATCATGCAAGCGCCTCCGCATTATGAAAGGTTCTGAGGCAATTGGTCTTGCGCCAAGAGCCGTGGAGAAGTGCAAGAACAGAAGCTGA 711 0.4909 MINFEETELRLGLPGASASDHGELTLKPTAGKRGFSETASVDLKLNLSSNNDSASASPATENPKDSTTTLEPPPRANDPARPPAKAQVVGWPPVRSFRKNIVNVQRSNNEEGEKSGGAAFVKVSMDGAPYLRKVDIRLYKSYQELSDALAKMFSSFTIQKCGSQGMKDFMNETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01405 236 SUPERFAMILY CAD & PB1 domains 111 217 - -
Lapu7g01405 236 MobiDBLite consensus disorder prediction 46 73 - -
Lapu7g01405 236 Gene3D - 113 230 - -
Lapu7g01405 236 FunFam Auxin-responsive protein 113 228 - -
Lapu7g01405 236 MobiDBLite consensus disorder prediction 1 34 - -
Lapu7g01405 236 ProSiteProfiles PB1 domain profile. 118 218 IPR000270 GO:0005515
Lapu7g01405 236 Pfam AUX/IAA family 6 227 IPR033389 -
Lapu7g01405 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 223 IPR003311 GO:0005634|GO:0006355
Lapu7g01405 236 MobiDBLite consensus disorder prediction 46 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01405 Lapu-Chr7 29493329 29496383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01405 107 221 B3 DNA Binding Superfamily AT3G61830 31.304 3.41e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu7g01405 AUX_IAA 1.5e-84 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01405 7 29493329 29496383 Lapu7g01405 7 29493329 29496383 ECH
Lapu6g00401 6 4018503 4021241 Lapu7g01405 7 29493329 29496383 PCT