Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01404 ATGGCCGGTAATAGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAACAGATCTTAGCAGTGCCTGAAGCTCCAGTGGGCTATGGCAGAACCGTAGCCACCGACGTTGGAATGTTGCAATTAGGGTCCACAACTCCATCTGCTGCTGCTCTCAGAGGTGGTGGAATCATGCCTCTGGGCCTGAATTTGGAGCAATCTGCCTTTCTAGGCCACCATGATTCCAGAAACCTAGTTGACGACGTTGTTAATGTTGATCCCACCGCTCACAATAATCATCACCACCACCACCACCACCACCATCATCAGCATCTCACTCTCCACAATAACAACTCACCACCCTCTTCTACCGCACCAATCACCGATCGCGATTCGATGCATGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACTCTGTCATCGCCTCCTCCACCTCCTCAGCCCCACCTCCATCTCCACCACCATAACCAACAGGCTTTTCAGGGCCAGGGAGGTGGAGGTCCAGCGTCAATGAGTGGCACCCCACAAGCGCCTGGCATTCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACACAGTATTGCAGAGCGGTTGCGTCGTGAAAGAATTGCTGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGCATTAATAAGACAGACAGAGCAGCGATGCTTGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTACAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGGGAGGACATAGAAGGTGGAACCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAGCAAGTTGCTAAACTTATGGAAGAAGATGTGGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGTCATCAAGCCAGAATCAAACAGTCACTGA 1074 0.5065 MAGNSSSEGLGDDFFEQILAVPEAPVGYGRTVATDVGMLQLGSTTPSAAALRGGGIMPLGLNLEQSAFLGHHDSRNLVDDVVNVDPTAHNNHHHHHHHHHHQHLTLHNNNSPPSSTAPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPPQPHLHLHHHNQQAFQGQGGGGPASMSGTPQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGTNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTVIKPESNSH* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01404 357 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 336 - -
Lapu7g01404 357 MobiDBLite consensus disorder prediction 85 121 - -
Lapu7g01404 357 MobiDBLite consensus disorder prediction 142 205 - -
Lapu7g01404 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 260 IPR036638 GO:0046983
Lapu7g01404 357 MobiDBLite consensus disorder prediction 165 181 - -
Lapu7g01404 357 Gene3D - 196 258 IPR036638 GO:0046983
Lapu7g01404 357 Pfam Helix-loop-helix DNA-binding domain 206 250 IPR011598 GO:0046983
Lapu7g01404 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Lapu7g01404 357 SMART finulus 207 256 IPR011598 GO:0046983
Lapu7g01404 357 MobiDBLite consensus disorder prediction 147 161 - -
Lapu7g01404 357 MobiDBLite consensus disorder prediction 106 121 - -
Lapu7g01404 357 MobiDBLite consensus disorder prediction 90 105 - -
Lapu7g01404 357 FunFam Basic helix-loop-helix transcription factor 196 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01404 Lapu-Chr7 29481022 29486098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01404 187 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.059 1.63e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g01404 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01404 - - vun:114189791 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01404 7 29481022 29486098 Lapu7g01404 7 29481022 29486098 ECH