Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01397 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCGCTTCTTGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACCGAGCGCTCTCGCAGATCTGCACACTTGGAGATGGAGCTCATCTCTAAACTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATCATAGGTTATTGTGAGGGAGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTACTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGAATACTTGCACATGAACCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTCTTGACTAAAGATCATGACATACGTCTTGGTGATTTTGGGCTTGCCAAAATGTTGACTTCTGATGACCTCGCTTCCTCTGTTGTGGGAACTCCTAGTTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACAGCGCACAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAATCGATAGTGTCTCCACTGCCTACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCAACAGAGCTGCTTGGACATCCACATCTTCAACCTTACGTTCTTAAGGTCCATCTCAAAATAAATAGCCCCAGGCGAAGCACATTGCCAGTTCATTGGCCAGAATCCAACTACTTAAAGAAAACTAGATTTTTGGTGCCAGAAGATGACCCTGTTTCCATGTATAGGGATAAGCGACATTCTTTCAGTAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACTCTTGAAATAGATTGTACTCCTGATCATTTGAATCAAAGATTAACAGAACTACGTATTGGAGATAGCCATGAAGTGAAATCAATCCGGAAACCTGCTGTTTCCAGAACTTCTAGCATTGCTAAGACTCCCAGATTCACTTCGTCAAAAGTCTCTGCCACCAACAAGAAATCAATGGAATCCTCAAAGAATCATAAGGCGATGCCTTTTTCACACAGTACCACAAAATCTGCTAATACAAATCGTAGAGCATCATTTCCATTGCCAAAAAGAGGTGGTGTTCGGCAGCCTTCTTTCGGGCCCAATGCCTCTATGATTAGTCACGTGTCTTCACCTGATATATCAGTCAATTCTCCACGAATTGATAAGATGGCTGAATTCCCATTAACTTCATATGTGGATTCGTTGTTCCCCATCAATAGAACATCATCCTTTGCTCAAGTTTCCTCAGGCCTCCCATCCAGTGGCAACCATTCGACTGTGATAGACAAATGCACGGTAGAGGTACATGATAGAGCCTCAAACAGGCCTGACTGTACTGATTCCTGGCAGGGAATCAAGCAGAGCGTGTTAAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTGCTTCAAGCCACACATCTTCTGACTTGCGCTGTCGACAATTTGACCCGTCATCATTTCAACAAAGGGCAGAAGCTTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTGCAGCAGGCAAGGTATGATGAACTTGGGGTTCTATTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACAGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAATACTTTCAACCCAGAAGAATCCATGTAA 1863 0.4208 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVSPLPTKYSSSFRGLVKSMLRKNPELRPSATELLGHPHLQPYVLKVHLKINSPRRSTLPVHWPESNYLKKTRFLVPEDDPVSMYRDKRHSFSNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLTELRIGDSHEVKSIRKPAVSRTSSIAKTPRFTSSKVSATNKKSMESSKNHKAMPFSHSTTKSANTNRRASFPLPKRGGVRQPSFGPNASMISHVSSPDISVNSPRIDKMAEFPLTSYVDSLFPINRTSSFAQVSSGLPSSGNHSTVIDKCTVEVHDRASNRPDCTDSWQGIKQSVLKEIDEDKSGSSDQNATAGASSHTSSDLRCRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01397 620 MobiDBLite consensus disorder prediction 531 549 - -
Lapu7g01397 620 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 570 - -
Lapu7g01397 620 SUPERFAMILY Protein kinase-like (PK-like) 1 306 IPR011009 -
Lapu7g01397 620 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Lapu7g01397 620 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lapu7g01397 620 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01397 620 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Lapu7g01397 620 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lapu7g01397 620 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Lapu7g01397 620 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01397 620 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g01397 620 MobiDBLite consensus disorder prediction 375 436 - -
Lapu7g01397 620 CDD STKc_Nek 3 258 - -
Lapu7g01397 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lapu7g01397 620 MobiDBLite consensus disorder prediction 524 549 - -
Lapu7g01397 620 MobiDBLite consensus disorder prediction 375 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01397 Lapu-Chr7 29409372 29417627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01397 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 1.45e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lapu7g01397 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01397 K08857 - gmx:100804898 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01397 7 29409372 29417627 Lapu7g01397 7 29409372 29417627 ECH
Lapu6g02067 6 20360026 20367624 Lapu7g01397 7 29409372 29417627 PCT