Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01365 ATGTCAAATGAACTCATTGTTGGTGGTGTTGAGAGTAGAAAGCTGAAACGTAAGATTGGAGAAGCATCATCCACAGATGATAGTGATTCAGAGTTATTGTCTTTGAGTCTAGGCAATAAAAGAATGGTGGGTGAATCATCATCATCATCAAGTTTCTTTGGTAAATCATTGACAAACCATAAGAAGACACCCAATTTTGGTTCAAAACCTATGGAAAACAATGATCACCAACTAGTGATTGTGCCAAAGCAACATAACCAATTCTCTTGCAAGTTTTGCCACAAGAAATTTCCAAACCCTCAAGCTCTTGGAGGACACCAAAATGCTCATAGGCCAGAAAGAGTGCTCTTAAGGATGGAGAAAGATATGAGAGCTTTTGGACATGGTGCTCACATGTTCTCACATGTTCCAATTCCCTTTCATGGCTCAATACCCTTTTATTATAGGCATAACATGCACCCAATCAAGCATTTCTCAACCATGTCATGGCCTCATTTTGTACCTAACTTTGGCAGCAAAGAGTTTCATGACACATGCATTCCAAGGCAACAGTTTGGCATGACCAACTCTTGGGGAACATTGTGGTACCAATACTATGATCTCTTTATATCTATGTAA 618 0.3932 MSNELIVGGVESRKLKRKIGEASSTDDSDSELLSLSLGNKRMVGESSSSSSFFGKSLTNHKKTPNFGSKPMENNDHQLVIVPKQHNQFSCKFCHKKFPNPQALGGHQNAHRPERVLLRMEKDMRAFGHGAHMFSHVPIPFHGSIPFYYRHNMHPIKHFSTMSWPHFVPNFGSKEFHDTCIPRQQFGMTNSWGTLWYQYYDLFISM* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01365 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Lapu7g01365 205 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 42 166 IPR044246 GO:0009788
Lapu7g01365 205 SUPERFAMILY beta-beta-alpha zinc fingers 86 115 IPR036236 -
Lapu7g01365 205 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01365 Lapu-Chr7 29039843 29040533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01365 88 142 C2H2 Transcription Factor Family AT5G10970 45.455 9.55e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g01365 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01365 - - gmx:102669436 217.238