Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01330 ATGTCCCTCGAAGACTCTCTAAGATCTCTCTCTCTCGACTACCTCAACCTTCTCATCAACGGCCAGGCCTTCAGCGACGTGACTTTCCAAGTCGAGGGTCGTCTCGTCCACGCCCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGCAAATTCTTCTGTGGACCTGACCCTCCGCCTGGCCTCGACCCCGCCGCCGCTTCCCGAGCCGGCGCCGCCTCCGCTGCGCGACCCCCCGGTGTGATCCCGGTAAACTCCGTCGGGTACGAGGTTTTCTTGCTGCTGCTGCAGTTTCTCTACAGTGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCAAGACCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTCGCTGCCGCCAGATACTTCGGCGTTGAACAACTTGCATTGCTCACTCAGAAACAACTTGCGAGCATGGTGGAGAAAGCCTCAATCGACGATGTGATGAAAGTGTTGATAGCATCTCGGAAGCAGGAAATGCAGCAACTGTGGACCACCTGCTCCCATCTCGTGGCCAAGTCAGGACTTCCGCCGGAGGTGCTCGCCAAGCACCTTCCCATTGACGTCGTCGCCAAGATCGAGGAGCTCCGGCTGAAATCCTCCCTCGCCCTCCGCTCCATGCTGCCGCTCCGCCACCCGCACCACCACCCCGACCTGGGAGCCGCCGACATGGAGGACCAGAAAATCCGGCGGATGCGGCGTGCGCTTGACTCCTCCGACGTGGAACTTGTGAAGCTCATGGTGATGGGGGAGGGCCTGAACCTGGACGAGGCGCTGGCGTTGCACTACGCCGTGGAGAGTTGCAGCAGGGAGGTGGTGAAGGCGCTGCTGGAGCTGGGTGCGGCGGACGTCAACTTCCCGGCCGGGCCGGCCGGTAAGACTCCTCTGCACGTGGCAGCGGAGATGGTGTGCCCAGAGATGGTGGCGGTGTTGCTGGACCACCACGCTGACCCGAACGTGAGAACCGTGGATGGGGTGACCCCGTTGGACATCCTCAGAACCCTAACCTCTGACTTCCTCTTCAAAGGGGCAGTCCCTGGACTCACCCACATTGAGCCCAACAAGCTCAGGCTCTGCTTGGAGCTCGTGCAATCTGCGGCTCTCGTTTTGTCTCGTGAAGAAGGGAACAACAGTGCTAACAACAACGACAACACTAATAACAACACCAACACTTCTGCTTCTGCAACTGCTATCTATCCACCAATGAGTGAAGAGCACAGCAGCAGCAATTTGGACTCCAGACTGGTGTATCTCAACCTCGGCGCCACACCACAAATAGGTGATGATGATAGCAGCCAAAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGTGGATGTGACCCATCAATGTACCATCACTCTCATGACTTCTAG 1443 0.5918 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPPGLDPAAASRAGAASAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLALRSMLPLRHPHHHPDLGAADMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVCPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNSANNNDNTNNNTNTSASATAIYPPMSEEHSSSNLDSRLVYLNLGATPQIGDDDSSQREAMNRHGSQGGGCDPSMYHHSHDF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01330 480 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Lapu7g01330 480 SMART ANK_2a 278 308 IPR002110 GO:0005515
Lapu7g01330 480 SMART ANK_2a 313 342 IPR002110 GO:0005515
Lapu7g01330 480 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Lapu7g01330 480 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Lapu7g01330 480 FunFam regulatory protein NPR5 isoform X2 244 361 - -
Lapu7g01330 480 SMART BTB_4 25 162 IPR000210 GO:0005515
Lapu7g01330 480 MobiDBLite consensus disorder prediction 397 417 - -
Lapu7g01330 480 Gene3D - 245 361 IPR036770 -
Lapu7g01330 480 MobiDBLite consensus disorder prediction 444 480 - -
Lapu7g01330 480 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Lapu7g01330 480 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Lapu7g01330 480 Pfam Domain of unknown function (DUF3420) 197 255 IPR024228 -
Lapu7g01330 480 SUPERFAMILY POZ domain 8 160 IPR011333 -
Lapu7g01330 480 CDD BTB_POZ_NPR_plant 8 162 - -
Lapu7g01330 480 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Lapu7g01330 480 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Lapu7g01330 480 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Lapu7g01330 480 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 480 IPR044284 GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01330 Lapu-Chr7 28448715 28453408 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu7g01330 BTB 5.3e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01330 K14508 - gmx:100811388 771.155