Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01301 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAGCATCTCTTAGGTGAAAACATCTCAGACTGCTTTTTCTCCAACCTCAATCCTGTGAAACTTGAAGTCCCCTCATCACCACAGTTTGATTTCAGCTCATATATTTTGGACAACACCAGCTTCTTCACTTTCCTTGAAGGGTATGACTTGGTGGCAGACATGGAGTTTGTTGATCACAAGGCCATGAAGTCCCCATCAACAACAACAACCATCCCCATCCCCTCTAAGGAACCAAAGAAATGCAATTCTCCTGAACCAATGGTATCATCAGAAGAGAAGGCAAAGAAGGCAGAATATGACGAGGCAAAACGTTACAGAGGAGTTAGGAGAAGGCCTTGGGGTAAGTTTGCTGCTGAAATCCGTGACCCTTCAAGGAAAGGAACAAGGGTCTGGCTTGGCACTTTTGACAGTGAAATTGATGCTGCTAAGGCCTATGATTCTGCTGCTTTCAAGATGAGAGGTCAGAAGGCCATTTTGAACTTTCCCCTTGAGGCTGGAGAGTCTGATCCAAAGCCAAACAGTTGTGGCAGGAAAAGGAGAAGAGAGAGCCTTCAATTGGAGCTTCCACAAGTCCAAGTTCATCATGGTGTATCCTGA 639 0.4523 MTTAEETSNLDLIRQHLLGENISDCFFSNLNPVKLEVPSSPQFDFSSYILDNTSFFTFLEGYDLVADMEFVDHKAMKSPSTTTTIPIPSKEPKKCNSPEPMVSSEEKAKKAEYDEAKRYRGVRRRPWGKFAAEIRDPSRKGTRVWLGTFDSEIDAAKAYDSAAFKMRGQKAILNFPLEAGESDPKPNSCGRKRRRESLQLELPQVQVHHGVS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01301 212 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Lapu7g01301 212 MobiDBLite consensus disorder prediction 176 212 - -
Lapu7g01301 212 PANTHER DNA-BINDING DOMAIN 86 186 IPR044808 GO:0003700|GO:0009873
Lapu7g01301 212 FunFam Ethylene-responsive transcription factor 2 117 178 - -
Lapu7g01301 212 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Lapu7g01301 212 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lapu7g01301 212 PRINTS Ethylene responsive element binding protein signature 158 178 IPR001471 GO:0003700|GO:0006355
Lapu7g01301 212 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Lapu7g01301 212 MobiDBLite consensus disorder prediction 185 199 - -
Lapu7g01301 212 MobiDBLite consensus disorder prediction 78 109 - -
Lapu7g01301 212 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Lapu7g01301 212 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Lapu7g01301 212 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01301 Lapu-Chr7 27872908 27873546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01301 1 206 AP2-EREBP Transcription Factor Family AT5G07580 41.256 7.92e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu7g01301 AP2 9.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01301 - - ccaj:109813158 333.183