Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01288 ATGGCTATGTTTGATCTCAATGTTGACATCAACCATGCTGATGATGCTGATGCTGGCTCAAGCTGTGCTCAAAAGGGGGGAAAACTGCAAAGTTTTCCACCTGAAATCTCAGATTCCAGGACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCGAACAATTCCTCTTCCTTGATTTTTGACATACTGAAGAAAGAGAGGGGTGGCTCAGAGTTTGATGCTGCCACTGAAGGCAACAGGGAGCAAAACATGGCACAAGAGGGAGAGATGCTGACAAGGACTCTTTTCCCTGTGACTTGTTCTGATAAAGGAGGAAGAGTGCCTGATTTCAAATTGGGGTTGTGGGGGAAGACTCAATTGTTGAACCTGTCCTTTCCTGAGCCTGATGGACAAAGTGGACTCAGAACCTTACAGCAGAAGCTACCTCATGTGAGGAAAAATAGGAGAGGACCAAGGTCTCGCAGCTCGCAATACCGGGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTGTATTTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCGTACGATAGGGCTGCTATTAAGTTTCGTGGAGTAGATGCTGATATAAACTTTAGTTTGAGAGATTATGAGGAGGATTTGAAGCAGATGAGAGCTTTGAGTAAGGAAGAGTTTGTGCTCGTACTTCGTCGACAAATCAATGGAATCTCGAGGAGAACTACAACATACAGAGGTGCATTAGCTCTTCCCAAAGGTGGTCTAGGAGAACCAAGAATGGGACCATTTCTTGGCAAGACATTTTCTCCCAAATCTTCCATCAAGTATGATGAAGGAAAAGTGGAGACCAGTTTTAGGCCCTTTTCCTATAATGAAAAAATACTTGCAAATTCCAGCATAGCAGGCACTTGCCATAATCTTGATTTGAGCCTGGGGATTTCTCCATCTTCTAAAAAATTGAAGAATTGTGATTATGGTGGAGAGTATTCCTTTGGATGTATGGCTTGTAAGATACCAGAGCAAATAGGAACAATGGAGAAATCCACAGTGGAGAGAATATGTAGTGTTCCTTTGCAAAAGTTTTCCAACTTTTGCAGCAGCAATGGCAGCATTGCCTCAAGGCCATTGCAATCAAATGCAGCATCATCAGGATTCGTCTCTTCTTCTGGCTGTTTCATCAGCCACACGTCCAATCTGCACACGTATTAA 1236 0.445 MAMFDLNVDINHADDADAGSSCAQKGGKLQSFPPEISDSRTSNSSVWNPADEDSSNNSSSLIFDILKKERGGSEFDAATEGNREQNMAQEGEMLTRTLFPVTCSDKGGRVPDFKLGLWGKTQLLNLSFPEPDGQSGLRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLRDYEEDLKQMRALSKEEFVLVLRRQINGISRRTTTYRGALALPKGGLGEPRMGPFLGKTFSPKSSIKYDEGKVETSFRPFSYNEKILANSSIAGTCHNLDLSLGISPSSKKLKNCDYGGEYSFGCMACKIPEQIGTMEKSTVERICSVPLQKFSNFCSSNGSIASRPLQSNAASSGFVSSSGCFISHTSNLHTY* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01288 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 309 - -
Lapu7g01288 411 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Lapu7g01288 411 MobiDBLite consensus disorder prediction 34 58 - -
Lapu7g01288 411 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700|GO:0006355
Lapu7g01288 411 MobiDBLite consensus disorder prediction 18 58 - -
Lapu7g01288 411 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Lapu7g01288 411 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Lapu7g01288 411 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Lapu7g01288 411 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Lapu7g01288 411 CDD AP2 159 215 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01288 Lapu-Chr7 27511955 27515438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01288 3 275 AP2-EREBP Transcription Factor Family AT2G28550 51.943 9.98e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu7g01288 AP2 2.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01288 K09284 - gmx:100776138 620.157