LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g01278	ATGTTGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCGAGGAGTTCAGGATGAGGAGGGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGACTGAGTCGATGTTTGGGGTGTGAGAGGGTGGAATTGGCTGTGCCAGTGGATAATGATGGTGGTGGTGGTTGCAAGAGTGGCTTTGATGGGGCTGGTGCTGAGTTTGAGTCTGAAGCAGGTGCAAGTAAAGAGAGCAAGGTCAATAGTGCCAGAGATGATGATCCTGGAGAGATGAACACGAACCGAGTTAGCAAATACAGCTATGGGGAAGCTGAGGCGTTGACTGATGAGATTGAAGAAGAGTCACAGTATGTTGAAGAGGTTTTCAGGATCAAGGATGTTTTGCTTAACTGTGAAGAAGAGTCTGATTCAGTTTTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACTGTGGATCTTTTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGGATCAAGTGACATTTGTCAACTTGCCAGGACTCTTATAGAAGGCTGGAAGGAAATGGTGGATGAGTGGGTCAAGGCTACCACAGATATTGCAGGTTCAGAAGGTACTCCAGATTCAGTAAATCCATCTGTTGTTGATGATGAAGAAGGGCTTCCATCACCTCCAATGGATGAAGGGGCTTTATTTGCCGCTCCAACTGGTTCTATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACATAGTGGGGAATTCATAAAAAACCGTGAACATGGAAGAGGTCCATCTATAAACAGTCAAAATACAGCAAAGAGGAGACCTCAGGCATCAAATCAGGCAAACATTATTGCCAAAGACAGTAAGGGTCAGCAAGCAAAGAAAAATGAGGCTGCTGTGAGGCCAAATAAACCAGTTATCGCTGATTCTGGTCCTGGCAGACCACCGAAATCAACCATGCAGAAGAAAGGCTATATTGAGCCGCAGGTGCAACAAAATACAGTGAAGAGCACTATCCCAAAAAATCCTCATGTTCGTCAGCTAGATAAACCCAGGTGTTCGGATGATGCTTCTGTCCAAGTGAAGTTAGAAGCCAGTAAGAGGAAACTTCAGGAGCGGTATCAGCAAGCTGAAAATGCTAAGAGGCAGCGGACTGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGTATTGGCCACCGAAATCCACATATGAAACCTGGAAATCACAAGAGGCAATGGGGTCATGGACGAAGATAG	1359	0.457	MLRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPEEFRMRRDGIAERLFSCRLSRCLGCERVELAVPVDNDGGGGCKSGFDGAGAEFESEAGASKESKVNSARDDDPGEMNTNRVSKYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNCEEESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSSDICQLARTLIEGWKEMVDEWVKATTDIAGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRHSGEFIKNREHGRGPSINSQNTAKRRPQASNQANIIAKDSKGQQAKKNEAAVRPNKPVIADSGPGRPPKSTMQKKGYIEPQVQQNTVKSTIPKNPHVRQLDKPRCSDDASVQVKLEASKRKLQERYQQAENAKRQRTVQVMELHDLPKQGIGHRNPHMKPGNHKRQWGHGRR*	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	225	248	-	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	428	452	-	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	437	452	-	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	371	390	-	-
	Lapu7g01278	452	Pfam	TFIIS helical bundle-like domain	167	215	IPR017923	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	293	321	-	-
	Lapu7g01278	452	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	140	229	IPR035441	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	94	120	-	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	96	116	-	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	274	291	-	-
	Lapu7g01278	452	Coils	Coil	392	419	-	-
	Lapu7g01278	452	ProSiteProfiles	TFIIS N-terminal domain profile.	143	218	IPR017923	-
	Lapu7g01278	452	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	133	227	IPR035441	-
	Lapu7g01278	452	PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	4	440	IPR044805	-
	Lapu7g01278	452	SMART	TFS2_5	142	217	IPR003617	GO:0005634
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	375	390	-	-
	Lapu7g01278	452	MobiDBLite	consensus disorder prediction	272	363	-	-
	Lapu7g01278	452	CDD	TFIIS_I	143	216	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g01278	Lapu-Chr7	27256616	27264715	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Lapu7g01278		Med26	1.1e-10	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g01278	-		-	gmx:100775579	788.875