Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01261 ATGGCGGTTTCTTCTTCTGCGATATGGGTCCTCTTGTTCTTTCTGATTCAACTACAAGCCATGGCCACCATCACAACACCACAGATCTCTCACCTCAGGAATGTTGAAGTGGAAAGACACAGGTTGCCGAGCTTGCAGAACTCGTCAATGGCGGAGAGGGCAATAGAGGCTGAGAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAGAACAGTACAGAGAGAAGGAATCTGGGATTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAACGCAACAGGAAGCGTCTTGCAGATTGTGGTATTGGTTTTGGCCGAAATGCAATTGGTGGTCGTGACGGCAAGTTCTATGTTGTGACTGACCCCAGGGATGATGACCCTGTGAACCCCAAACCTGGGACTCTTCGCCATGCTGTGATCCAGGACAGACCCTTGTGGATTGTTTTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAACTAATCATGAACAGCTTCAAGACCATTGATGGAAGAGGAGTCAATGTACACATTGCTAATGGGGCATGTATCACAATCCAGTTTGTTACTAATGTCATCATCCATGGTCTGCATATTCATGACTGCAAACCCACTGGAAATGCCATGGTGAGGAGCTCCCCCACCCACTTTGGGTGGAGGACAATGGCCGATGGAGATGCCATCTCCATATTTAGTTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCTTGGGCTCAACAGCCATAACTATTTCAAACAACCACTTCACCCACCACAATGAGGTGATTCTACTGGGCCACAGTGACTCTTACACAAGAGACAAGCTCATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGATGTAGACATGGATATTTTCACGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCTATTGGTGGAAGTGCTAACCCCACCATTAACAGCCAGGGCAACCGATACAATGCTCCTGTTAACCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCAGAATGGTGCTTTCTTCACCCCATCAGGAGCTGGAGCCTCAGCCAGCTACGCCAGGGCCTCAAGCTTAGGAGCCAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTCGGTTGCAAAAGAGGCCGTCAGTGCTAG 1341 0.4847 MAVSSSAIWVLLFFLIQLQAMATITTPQISHLRNVEVERHRLPSLQNSSMAERAIEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFSSSHIWVDHNSLSHCADGLVDAVLGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLQNGAFFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRQC* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01261 446 FunFam Pectate lyase 97 439 - -
Lapu7g01261 446 SUPERFAMILY Pectin lyase-like 72 440 IPR011050 -
Lapu7g01261 446 Pfam Pectate lyase 179 361 IPR002022 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Lapu7g01261 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Lapu7g01261 446 PANTHER PECTATE LYASE 18-RELATED 59 444 IPR045032 GO:0030570
Lapu7g01261 446 Gene3D - 97 439 IPR012334 -
Lapu7g01261 446 SMART amb_all 172 369 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01261 Lapu-Chr7 26928918 26934981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01261 28 446 Polysaccharide Lyase AT4G13710 79.717 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01261 K01728 - gmx:100781845 855.899