Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01247 ATGACTGATAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATCGAGAGCAAGTTGAGCCTGGAGCTCTTGAAGGCTGTGGAGAAGGTTGGCTATAAAACCCCTTCTCCGATTCAGATGGTAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGTCGAGACTGGTTCCGGGAAGACCGCGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGGCTTCCTCCCATGAGCGAGGACAACAAGGCTGATGGTCCCTATGCTGTTGTCATGGCCCCCACCCGCGAGCTCACGCAACAGATCGAGGATGAGACTGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTATTGGTGGACAATCCATTGAGGAGCAAGGGTTTAAGATCAGGCAGGGTTGTGAGATTGTCATTGCAACTCCTGCAATTAGTGAAGATGAGATTCAGCATGATTCCGATTTCTTTCAAAACGACGACGTGTCCTCACAGTGGGTCCCCACTACCCCATGTGCTTTTCCTCCTTTTTCGTAG 591 0.511 MTDRDWRIFREDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKVGYKTPSPIQMVAIPLGLQQRDVIGIVETGSGKTAAFVLPMLSYITRLPPMSEDNKADGPYAVVMAPTRELTQQIEDETVKFAQYLGIKVVSIIGGQSIEEQGFKIRQGCEIVIATPAISEDEIQHDSDFFQNDDVSSQWVPTTPCAFPPFS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01247 196 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 196 IPR014001 -
Lapu7g01247 196 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 163 - -
Lapu7g01247 196 Pfam DEAD/DEAH box helicase 52 168 IPR011545 GO:0003676|GO:0005524
Lapu7g01247 196 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
Lapu7g01247 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 176 IPR027417 -
Lapu7g01247 196 Gene3D - 1 181 IPR027417 -
Lapu7g01247 196 SMART ultradead3 46 195 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01247 Lapu-Chr7 26593181 26594464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01247 34 172 Eukaryotic Initiation Factors Gene Family AT3G13920 33.813 3.65e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01247 K12858 - gmx:100799264 301.212