Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01245 ATGGCTCCTACTACACTCCTACGTGCATTGTCTCATTTTTTCACTCTTGTGGCTTCACTTTCAATGCTCCATGTTGTTCCCTCCTCTTGTTTCAACCCTAGAAAGATTGTTAATGCTTCATTTGCTTCATACACTTCTTCATATTCAGATTGGTCACCTGCTCTAGCCACTTGGTATGGACCTGCTCAAGGGGATGGTAGTGAAGGTGGTGCTTGTGGTTATGGAAGCTCTGTTGGGGAGCCTCCATTCTCTTCAATGATATCTGCTGGAAGCCCTCTTTTGTATGAATCAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGAAAGTATGCATGCTCAGGCAACCCTGTGAGAGTAGTGATCACAGATGCATGTCCAGGGTGTGACTCTGATGCTCAATACCATTTTGATTTGAGTGGCTCTGCTTTTGGTGCCATGGCACTTTCAGGCCAAGACCAGAAGCTTCGCAATGCTGGCAAAATAGACATTCAATATAGAAGAGTTGAATGCAACTATCCTGGTGTGTCAATAGCTTTTCGTGTGGACACTGGTTCGAACCAACAATACTTTGCGATCTTGATTGAATACGAGGGTGGTGATGGTGATCTTGAGAAAGTTGAACTGAAGGAAGCACTTGATTCAGCTCCATGGTATGCCATGCAGCGATCATGGGGTGCAGTTTGGAAACTTGACAAAGGCTCACCACTCAAAGCACCACTCTCTATCAGACTAACCACTCTTAAATCTGGGAACACTGTTGTGGCCAACAATGTCATCCCTAACGGCTGGAACCTTGGTCAGACATATCGATCAATTGTCAACTTT 834 0.452 MAPTTLLRALSHFFTLVASLSMLHVVPSSCFNPRKIVNASFASYTSSYSDWSPALATWYGPAQGDGSEGGACGYGSSVGEPPFSSMISAGSPLLYESGKGCGSCYEVKCTGKYACSGNPVRVVITDACPGCDSDAQYHFDLSGSAFGAMALSGQDQKLRNAGKIDIQYRRVECNYPGVSIAFRVDTGSNQQYFAILIEYEGGDGDLEKVELKEALDSAPWYAMQRSWGAVWKLDKGSPLKAPLSIRLTTLKSGNTVVANNVIPNGWNLGQTYRSIVNF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01245 278 CDD DPBB_EXPB_N 51 173 - -
Lapu7g01245 278 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Lapu7g01245 278 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Lapu7g01245 278 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Lapu7g01245 278 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Lapu7g01245 278 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Lapu7g01245 278 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Lapu7g01245 278 SUPERFAMILY PHL pollen allergen 180 274 IPR036749 -
Lapu7g01245 278 PANTHER EXPANSIN-B3 24 278 - -
Lapu7g01245 278 SUPERFAMILY Barwin-like endoglucanases 40 177 IPR036908 -
Lapu7g01245 278 Gene3D - 34 174 IPR036908 -
Lapu7g01245 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 191 274 IPR007117 -
Lapu7g01245 278 Pfam Expansin C-terminal domain 180 263 IPR007117 -
Lapu7g01245 278 Gene3D - 175 278 IPR036749 -
Lapu7g01245 278 Pfam Lytic transglycolase 88 168 IPR009009 -
Lapu7g01245 278 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Lapu7g01245 278 PRINTS Major pollen allergen Lol pI signature 109 119 IPR005795 GO:0005576|GO:0019953
Lapu7g01245 278 PRINTS Major pollen allergen Lol pI signature 89 100 IPR005795 GO:0005576|GO:0019953
Lapu7g01245 278 PRINTS Major pollen allergen Lol pI signature 198 213 IPR005795 GO:0005576|GO:0019953
Lapu7g01245 278 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Lapu7g01245 278 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Lapu7g01245 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 178 IPR007112 -
Lapu7g01245 278 SMART dpbb_1 87 168 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01245 Lapu-Chr7 26573807 26577928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01245 28 278 Expansin Gene Family AT1G65680 59.761 9.04e-111 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01245 - - gmx:100777550 480.33