Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01232 ATGGCAACCGCAGTGGGAAGCTCGCGTTTCCTTTCCCACCGTGCACTTTTCGTCCTGCTCTTTCTCTTCTCTCTTTCCTTATGCTCCTTCGCGCTCGACATGTCCATCATCGACTACGACGAGGCCCTCCTGCGTAACACGTACGAGGCGTGGCTGGTGAAACACGCCAAGGCCTACAACGCCATTGGAGAGAAGGAGAGAAGGTTCCAAATTTTTAGGGAAAATTTGAGGTTCGTTGAGGAGCACAACAGTGGGGCGGGGAACAAGGAGTTCAGGCTTGGGTTGAACAGGTTCGCCGATCTCACCAACGAAGAGTATAGGGCTTTGTTCTTGGGCACCCAGAAGAAGCTCACGCCCAGGAAGAGTGGCCGCTACGCTTTTCGCGCCGGGGAGGAGCTGCCTGCCATGGTGGATTGGAGGGAGAAGGGTGCTGTTGCCCCCGTCAAAGATCAAGGCCAGTGTGGGAGTTGCTGGGCATTCTCCACGGTTGCAGCGGTGGAAGGAATCAATCAAATTGTAACTGGCAATCTGACCTCTCTATCAGAGCAAGAATTGGTGGACTGTGACAGAAGCTACAACATGGGGTGCAATGGTGGTCTCATGGACAATGCTTTTGAGTTTATAATAAAAAATGGAGGCATTGACACAGAAGAGGATTACCCCTATACAGCACGTGATAATACATGTGATCCAAACAGGAAAAATGCTCGCGTTGTTACCATTGATGGATATGAAGATGTCCCAACCAATGATGAGAAATCTCTGATGAAGGCTGTTGCAAATCAACCAGTTAGTGTTGCCATTGAAGCTGGTGGCAGGGAATTTCAACTCTATGAATCGGGTGTTTTTACTGGCCGATGTGGGACAGACCTAGATCATGGTGTTGCAGTAGTTGGATATGGAACAGAGAATGGCACTGATTACTGGCTAGTGAGGAATTCTTGGGGTCCAGCATGGGGTGAAAATGGTTACATTAAGCTACAGAGAAACGTGTTGAACAGTGAGACTGGTAAGTGTGGGATTGCAATGGAGGCATCATACCCCACCAAGAGTGGTGCTAACCCCCCAAATCCTGGTCTTTCTCCCCCAACTCCTGCAACCCCTTCAACAGTCTGTGATGAATACTACTCTTGCTCCCCTGGAACCACATGCTGCTGCCTTTTTGATTATAGAGGGTTCTGCTTTGGATGGGGATGCTGCCCCATTGAGTCTGCAACATGCTGTGATGACAAGTCCAGTTGCTGCCCTCCTGAATTCCCTGTCTGTGATACCACATCTGGATCTTGCCTATTGAGCCGAGACAATCCATTTGGGGTAAAAGCTTTGAAAAGGGCGCCTGCTACATGTACTTGGACCCAAAGGAAAGTTGCCATGAAGAGTGACTAA 1386 0.4957 MATAVGSSRFLSHRALFVLLFLFSLSLCSFALDMSIIDYDEALLRNTYEAWLVKHAKAYNAIGEKERRFQIFRENLRFVEEHNSGAGNKEFRLGLNRFADLTNEEYRALFLGTQKKLTPRKSGRYAFRAGEELPAMVDWREKGAVAPVKDQGQCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELVDCDRSYNMGCNGGLMDNAFEFIIKNGGIDTEEDYPYTARDNTCDPNRKNARVVTIDGYEDVPTNDEKSLMKAVANQPVSVAIEAGGREFQLYESGVFTGRCGTDLDHGVAVVGYGTENGTDYWLVRNSWGPAWGENGYIKLQRNVLNSETGKCGIAMEASYPTKSGANPPNPGLSPPTPATPSTVCDEYYSCSPGTTCCCLFDYRGFCFGWGCCPIESATCCDDKSSCCPPEFPVCDTTSGSCLLSRDNPFGVKALKRAPATCTWTQRKVAMKSD* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01232 461 Gene3D Granulin 368 431 IPR037277 -
Lapu7g01232 461 CDD Peptidase_C1A 134 348 IPR039417 -
Lapu7g01232 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 291 301 IPR025660 -
Lapu7g01232 461 SMART pept_c1 133 349 IPR000668 GO:0006508|GO:0008234
Lapu7g01232 461 Pfam Granulin 383 430 IPR000118 -
Lapu7g01232 461 SMART Inhibitor_I29_2 48 106 IPR013201 -
Lapu7g01232 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 308 327 IPR025661 -
Lapu7g01232 461 FunFam Cysteine protease 1 31 351 - -
Lapu7g01232 461 Gene3D Cysteine proteinases 35 351 - -
Lapu7g01232 461 PRINTS Papain cysteine protease (C1) family signature 293 303 IPR000668 GO:0006508|GO:0008234
Lapu7g01232 461 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Lapu7g01232 461 PRINTS Papain cysteine protease (C1) family signature 308 314 IPR000668 GO:0006508|GO:0008234
Lapu7g01232 461 SMART GRAN_2 372 429 IPR000118 -
Lapu7g01232 461 Pfam Papain family cysteine protease 133 349 IPR000668 GO:0006508|GO:0008234
Lapu7g01232 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Lapu7g01232 461 Pfam Cathepsin propeptide inhibitor domain (I29) 48 106 IPR013201 -
Lapu7g01232 461 SUPERFAMILY Cysteine proteinases 43 349 IPR038765 -
Lapu7g01232 461 FunFam Cysteine protease 1 369 432 - -
Lapu7g01232 461 SUPERFAMILY Granulin repeat 370 403 - -
Lapu7g01232 461 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 41 347 IPR013128 GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01232 Lapu-Chr7 26157125 26161100 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01232 K25900 - gmx:100806968 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01232 7 26157125 26161100 Lapu7g01232 7 26157125 26161100 ECH
Lapu1g00051 1 4229571 4230912 Lapu7g01232 7 26157125 26161100 PCT