Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01206 ATGGCTGCCACTGCTGCAGGCATAGCTTCATTGTTTTCTTCTTCCGTTAAAAGCGTCAAATGTCTTCGTTCCATGCACTGCTCCATGATGGATCCCCTTATGACAACAATGTCGTCAAACCGCATGTTCGCACCTGTCTCACACTTAGTGGAACCTTTGTCCATTGGAGGTACCATATCGCATAGGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAGGAAGAGGTGGTTGTTGCGGATGATGCTGGTTTTGTTGAGGAAGAGAAAGTGGAGGAGAATGAAGGGGAAGCGGAGGCAGAACTAGACTCCGATGAATCCTTTGCTAGCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGTCTAATTCAGGATTATGGTAGCGCAGAACTAATTGAGGTCCTTTACGACAGGGACACCGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGATTGTAATACAGTAATAGAAAACCTTGATGGAAAAGAATTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAACAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACAGAACATAAGCTCTTTGTTGGGAATCTGTCATGGTCAGTAACTAATGAGAGTTTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTATATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGTTTTGCAACAAAAGCAGAGATGGAATCTGCCCTTGGAGCGTTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGTTTGGCTCAAGGAAAACGTGCACAAGGCTAA 858 0.4464 MAATAAGIASLFSSSVKSVKCLRSMHCSMMDPLMTTMSSNRMFAPVSHLVEPLSIGGTISHRLWGPRISAAVAQEEVVVADDAGFVEEEKVEENEGEAEAELDSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNTVIENLDGKEFLGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTNESLTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFATKAEMESALGALNDVELEGRAMRVSLAQGKRAQG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01206 285 Gene3D - 72 191 IPR012677 -
Lapu7g01206 285 PANTHER OS02G0815200 PROTEIN 58 283 - -
Lapu7g01206 285 SMART rrm1_1 112 185 IPR000504 GO:0003723
Lapu7g01206 285 SMART rrm1_1 203 276 IPR000504 GO:0003723
Lapu7g01206 285 FunFam 28 kDa ribonucleoprotein, chloroplastic 193 284 - -
Lapu7g01206 285 SUPERFAMILY RNA-binding domain, RBD 105 194 IPR035979 GO:0003676
Lapu7g01206 285 CDD RRM2_NsCP33_like 203 278 - -
Lapu7g01206 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lapu7g01206 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Lapu7g01206 285 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 192 - -
Lapu7g01206 285 SUPERFAMILY RNA-binding domain, RBD 195 282 IPR035979 GO:0003676
Lapu7g01206 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Lapu7g01206 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Lapu7g01206 285 Gene3D - 192 285 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01206 Lapu-Chr7 25403067 25406561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01206 110 281 Eukaryotic Initiation Factors Gene Family AT3G16380 32.461 1.24e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01206 - - gmx:100820203 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01206 7 25403067 25406561 Lapu7g01206 7 25403067 25406561 ECH
Lapu6g00465 6 4873467 4879527 Lapu7g01206 7 25403067 25406561 PCT
Lapu6g00713 6 7512359 7517903 Lapu7g01206 7 25403067 25406561 PCT