Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01194 ATGTCGATAAACAACTACTCCGTGGACCTTCCCGAAACAACACTGTGGTGGCCCCAGCAACTACAACAACCCATCTTAATGGAACCAACCCCAAACCCCTCCTCCACTTCCTGGCCCTATACGGACCCTCTGCGACTCAACCTCAACCACCAAAACGACGACGTAGAAGAAGACGAAGAAGAAGAAGACCAAACCACAACCACTACACATCAAGAAGAAACTGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACTCCCAGCGACGTGGGGAAGCTCAACCGCCTCGTAATCCCGAAGCAGCATGCCGAGAAGTACTTCCCACTCAGTGGTGGCGGTGGCGGTGGCGGTGGCGGTGACTCAAGCGAGTGCAAGGGGCTTCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGCTACTCCTACTGGAACAGCAGTCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGATGCCGGCGACGTCGTTTTGTTCGAGCGCCACCGCGCCGACGCCCACCGCCTCTTCATCGGATGGAGGCGCCGTCGACACGGCGACACATCGCCGGTGCACGTTAACAGCAGGGCGGTGGGGCACGGGAAGAGTGGCGATGGGAATAGTAAGAATGAGGCTGCTGTTACTGCTGGTGGTATGGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCAGCACCAGCTGCATAATCATCAGCCCTCGCCATACCAATATGACTCTCTTCATGCAGGAAGAGGGTCGGAAGGTGAGAGAGCAGTGGGAAACAGAAACAGTGGGAGTTCGAGGTCTAGTTCGAGGGTACTTAGGCTGTTTGGGGTGAACATGGAATGCGAAGCTGAACATGATTCTGGACCCTCCACACCCCAATGCTCCTACAATACCACCAACATGCCCTCCACACAGGCCACACACACCCTTCACCATTTCTACCATCATCACCAACCTTCTTCCCATCCCCCTCCTCCTCCTCCTCCTCCTCCTCATCACATGCTACGCCACCAACCATACTACTACTAG 1077 0.5543 MSINNYSVDLPETTLWWPQQLQQPILMEPTPNPSSTSWPYTDPLRLNLNHQNDDVEEDEEEEDQTTTTTHQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGGGGGDSSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAHRLFIGWRRRRHGDTSPVHVNSRAVGHGKSGDGNSKNEAAVTAGGMGWTRGFYSAHPYPTHQHQLHNHQPSPYQYDSLHAGRGSEGERAVGNRNSGSSRSSSRVLRLFGVNMECEAEHDSGPSTPQCSYNTTNMPSTQATHTLHHFYHHHQPSSHPPPPPPPPPHHMLRHQPYYY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01194 358 Gene3D - 70 202 IPR015300 -
Lapu7g01194 358 SUPERFAMILY DNA-binding pseudobarrel domain 77 193 IPR015300 -
Lapu7g01194 358 MobiDBLite consensus disorder prediction 25 48 - -
Lapu7g01194 358 Pfam B3 DNA binding domain 82 193 IPR003340 GO:0003677
Lapu7g01194 358 SMART B3_2 82 194 IPR003340 GO:0003677
Lapu7g01194 358 MobiDBLite consensus disorder prediction 67 84 - -
Lapu7g01194 358 MobiDBLite consensus disorder prediction 242 286 - -
Lapu7g01194 358 CDD B3_DNA 80 184 IPR003340 GO:0003677
Lapu7g01194 358 ProSiteProfiles B3 DNA-binding domain profile. 82 194 IPR003340 GO:0003677
Lapu7g01194 358 MobiDBLite consensus disorder prediction 25 89 - -
Lapu7g01194 358 MobiDBLite consensus disorder prediction 299 319 - -
Lapu7g01194 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 308 IPR044800 GO:0003700
Lapu7g01194 358 MobiDBLite consensus disorder prediction 304 319 - -
Lapu7g01194 358 MobiDBLite consensus disorder prediction 243 257 - -
Lapu7g01194 358 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01194 Lapu-Chr7 25124942 25127966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01194 75 311 RAV Transcription Factor Family AT5G06250 50.207 4.21e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu7g01194 B3 1.6e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01194 K09287 - gmx:100795470 394.815