Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01166 ATGGATCATGAAGAATATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGAAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTTCCCAAGATGGTAGTTTGGATTCTCATACAACTTTGAACGGCAAGGATGATTTGGAACTGGAGGTATTTGTCTTCAATCTCTTGGTTGTTGTTCGGGTCCTTGATGGATTGCTAGATGATGTTGAAATCAATGATCTTGAAGGACCCGATGGTTTCCCTGGTGCATGTGAAGAATATTTTTTTGATTTTGAGTTTGCTGACAAATTTGAGGAGGTTCTAGGTTCTGGTCCTTTTGAAGGTTCACTCTTGCCGAACTCAAGTTCGGAGAGTCATTCTTCAGGATTAAGTGGAAGTAGCATCGTTGGTGGGGTATTGGAATCAAAAAAAGTACCTAATGGACCATCTGAATGCAAAAATAATCCTCTAGATGAGACAGTAACCTATGAATCGCATGGTGCCTTCAGCAACAATCCTAGTCAACCATTAGAAGGAAATTGCAGGTACAACATTTCACTTGATGTACAACATCTGCAAGAGCTGGATAACTATCGTCATTTAGCTGGTGGTATACTAACTTGTGAGAAGGAAAAGGGTCCTGTTGAAAAATGCCAACCTGCTGCACTTAGGGAGAAAAGATTCCGAAAGCCTACGCAGAGGTATATTGAAGAATTTTCAAATGTGAGGTCAAAGGAAAAGGTAGCACCTGCTGGTACAAAATCTAAACATTCAAGTGACTCATCATGTAATGTACTTCATATAAGAATTAAATCATTGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTAAGGTGATGCTTCCTGAGTTGCAAGTACGCAAAGGGCGTCGGAAGAAAGAGAAACTCGAGTACGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACGACAAAAAGATCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATACGGAGTTGGTCGTTGGACTGACATTAAGAAGTTTTTGTTTTCTTCTTCAAGCTACCGAACTCCCATAGATCTTAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTACTGTCCAGAAAAACAAGAAAGAGGCTGAGCAAAATGACGAGTTTGCCCTGCGTCCCTTACCATTTAATGTAGTACATCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTGCGTGTTAGCCAAGTTGGCTCTTCTGCCGTTGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1425 0.4098 MDHEEYLRKCSNMKCQRVQVDESYVPALQDEVMEVEHLLAEPRNNLASQDGSLDSHTTLNGKDDLELEVFVFNLLVVVRVLDGLLDDVEINDLEGPDGFPGACEEYFFDFEFADKFEEVLGSGPFEGSLLPNSSSESHSSGLSGSSIVGGVLESKKVPNGPSECKNNPLDETVTYESHGAFSNNPSQPLEGNCRYNISLDVQHLQELDNYRHLAGGILTCEKEKGPVEKCQPAALREKRFRKPTQRYIEEFSNVRSKEKVAPAGTKSKHSSDSSCNVLHIRIKSLKRSPSEKSSNENSKVMLPELQVRKGRRKKEKLEYEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASTVQKNKKEAEQNDEFALRPLPFNVVHRVRELAKIHPYPRQRGSKKLRVSQVGSSAVADSPPVSLSKRNVRRKFT* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01166 474 MobiDBLite consensus disorder prediction 286 307 - -
Lapu7g01166 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 341 401 IPR017930 -
Lapu7g01166 474 Gene3D - 335 448 - -
Lapu7g01166 474 Pfam Myb-like DNA-binding domain 349 397 IPR001005 -
Lapu7g01166 474 MobiDBLite consensus disorder prediction 253 274 - -
Lapu7g01166 474 MobiDBLite consensus disorder prediction 446 461 - -
Lapu7g01166 474 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 448 - -
Lapu7g01166 474 SUPERFAMILY Homeodomain-like 349 416 IPR009057 -
Lapu7g01166 474 SMART sant 346 399 IPR001005 -
Lapu7g01166 474 MobiDBLite consensus disorder prediction 439 474 - -
Lapu7g01166 474 MobiDBLite consensus disorder prediction 325 346 - -
Lapu7g01166 474 ProSiteProfiles Myb-like domain profile. 342 397 IPR001005 -
Lapu7g01166 474 CDD SANT_TRF 348 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01166 Lapu-Chr7 24152155 24162867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01166 348 397 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 2.55e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu7g01166 Myb_DNA-binding 9.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01166 - - gmx:100810255 707.983