Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01160 ATGTCTACCTCTGCTGCTTCTCTTGCACTCCCCGCTCTCACTCTCCGGTCACGCCACTCTCTCTCTTCACCACAATGCTTCTCCTCCTCTCTCTCTCTCATCCCTAACGCCAAACCCATTTCCATTTCTACCGTTTTCCTCAAACCCACCTTTTCCCTCTCCTCACGCTTCATTCCTCGCGTCGCCTTATCCTCAGAGTACGACCAAGAAGAGGACACCTTCGACGCCGGCCAGAGCTTCTCCCCCGACCTTAAGCTCTTTGTCGGCAACCTTCCGTTCAGCATAGACAGTGCGCAGCTCGCCGAGCTCTTCGAAAAGGCCGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACAACTGGTAGAAGCAGGGGTTTTGGGTTTGTGACCATGTCTTCGGTCGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCTTGAAAGTGAATGCTGGGCCACCTCCTGCTCGGAGTGAGAGTTCATCTCGTTTTAGGAGTTCTCCCAGAGGTGGTGGTGGTGGTGGTGGTTTTTCGGATAGTGCTAACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTCGACCATGTAGCACTGGAGTCATTGTTTCGGGAACAAGGAAATGTCGTGGAAGCTAGGGTAGTCTATGACAGGGACAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGAAGAGGTCAACAATGCAATTCAGTCCTTGGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATTCGAAACCCAGGCGGTTTTAA 822 0.5134 MSTSAASLALPALTLRSRHSLSSPQCFSSSLSLIPNAKPISISTVFLKPTFSLSSRFIPRVALSSEYDQEEDTFDAGQSFSPDLKLFVGNLPFSIDSAQLAELFEKAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGRALKVNAGPPPARSESSSRFRSSPRGGGGGGGFSDSANKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRAIRVSLADSKPRRF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01160 273 MobiDBLite consensus disorder prediction 156 186 - -
Lapu7g01160 273 FunFam 28 kDa ribonucleoprotein, chloroplastic 185 271 - -
Lapu7g01160 273 SMART rrm1_1 191 264 IPR000504 GO:0003723
Lapu7g01160 273 SMART rrm1_1 85 158 IPR000504 GO:0003723
Lapu7g01160 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Lapu7g01160 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Lapu7g01160 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Lapu7g01160 273 FunFam Ribonucleoprotein A, chloroplastic 63 184 - -
Lapu7g01160 273 CDD RRM2_NsCP33_like 191 266 - -
Lapu7g01160 273 SUPERFAMILY RNA-binding domain, RBD 188 272 IPR035979 GO:0003676
Lapu7g01160 273 PANTHER OS02G0815200 PROTEIN 29 269 - -
Lapu7g01160 273 SUPERFAMILY RNA-binding domain, RBD 77 187 IPR035979 GO:0003676
Lapu7g01160 273 Gene3D - 188 273 IPR012677 -
Lapu7g01160 273 Gene3D - 62 187 IPR012677 -
Lapu7g01160 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01160 Lapu-Chr7 23993054 23996298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01160 86 272 Eukaryotic Initiation Factors Gene Family AT4G34110 31.250 5.34e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01160 - - var:108324910 413.305