Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01154 ATGCTCCAAACAACCTGCATTTTACTCTTCTTCTCCCTTCTGCCCTCGTTTTTCCCTCATGGAACAGCAACACTCAACCTCACTCTCCCAGGGCAACATCCAGACCCGGAAGCTGTTGCCACAGAAGTTCATAGGAGGGTGAATGCTTCTATGGGAAGGAGGGAAATGCTGAGGTTGTCAGAGAAAGAGGTGGAATCGTGTCTCACAGGTAACCCCATTGATGACTGCTGGAAGTGTGACCCAGATTGGGCCAACAACAGGCAGAGGCTTGCTGATTGTGCAATAGGGTTTGGGCAGAACGCAAAGGGTGGAAAAGGTGGGAAATTTTACATAGTGACCGATTCATCTGATGGGGACCCTGTGAACCCAAAACCAGGAACACTTAGATATGGTGTGATACAGAACGAACCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAATAGCTACAAAACCATTGATGGGCGTGGCGCTGATGTGCACATTGTGGGTGGAGGCTGCATCACTCTTCAGTATATTAGCAATGTCATCATACACAACATTCACATCCACCATTGCCACCCCTCTGGTAATGCTAACGTGCGGTCGAGTCCAGAGCACTACGGGTACCGCACGGAGTCAGACGGCGATGGAATCTCGATCTTCTCGTCGCGCGACATCTGGATCGATCACTGCACGCTATCGCGATGCAAGGACGGTCTGATCGACGCGGTGATGGGGTCGACCGCAATAACGATCTCGAACAACCACTTCTCGCACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCTGCCGGACTCGGCGATGCAGGTGACGATCGCGTTCAACCACTTCGGGGAGAATCTGGTGCAGCGCATGCCGCGTTGCAGACTAGGGTACATCCACGTGGTGAACAACGACTTCACGCGATGGGAGATGTACGCTATCGGGGGAAGTGCGAGACCTACGATTAACAGCCAGGGTAACCGCTACACCGCGCCGGAGGATCCCTACGCGAAGCAGATAACGAAGAGGCTGGACGCCGGGGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGATGTGATGCTGAACGGCGCCTTTTTCGTGGCCTCAGGAGGTGAGGCCGGAGCTGACTACCAAAATGCCTACAGCGTTGAGCCTAAAAACGTCGATCGCATCTCGCTCCTCACCATGTCCGCCGGTGTGCTCGGCGTTGCCAGGGACAATAATCTGGGAATGTGGACGAGAGGACCCAGTGATGGTGGTGTATATTTTTCAGATACAGGCCCAGAATACACTGATGACATGTCCCGGACTGCAATGCCGTTGCCACCTTCGCGTACTTTCACTCTTCTATCTTCATTTCTTGCTTTGTTCTGCCTCTTATTTCATTCAATTACCATAACAACACTTCTATAG 1443 0.5246 MLQTTCILLFFSLLPSFFPHGTATLNLTLPGQHPDPEAVATEVHRRVNASMGRREMLRLSEKEVESCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDGDPVNPKPGTLRYGVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSARPTINSQGNRYTAPEDPYAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGEAGADYQNAYSVEPKNVDRISLLTMSAGVLGVARDNNLGMWTRGPSDGGVYFSDTGPEYTDDMSRTAMPLPPSRTFTLLSSFLALFCLLFHSITITTLL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01154 480 Gene3D - 70 412 IPR012334 -
Lapu7g01154 480 SUPERFAMILY Pectin lyase-like 60 392 IPR011050 -
Lapu7g01154 480 SMART amb_all 145 342 IPR002022 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Lapu7g01154 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Lapu7g01154 480 PANTHER PECTATE LYASE 18-RELATED 32 414 IPR045032 GO:0030570
Lapu7g01154 480 FunFam Pectate lyase 70 412 - -
Lapu7g01154 480 Pfam Pectate lyase 154 334 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01154 Lapu-Chr7 23880572 23885026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01154 1 445 Polysaccharide Lyase AT3G53190 72.000 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01154 K01728 - gmx:100815062 861.677