Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01150 ATGCAGACACAAGAGGAATTACAAGTGCTTTCCAAGGATCAGATGATGATCAAAGGCAAGCGCAACAAGCGTCAAAGGGCACCATCCCCTCCTAGGTTTGCCATGCCTGCTTCAACCTCAACTAGCACTAACAATTCCATTGATAGTGCCACAACGTCAACCACCACCAACACCCCAATTGAATCAATAGAAGAAGAAGACATGGTGAATTGTCTCATTCTCCTAGCTCAAGGCACACACCATGTGGCAGCAGCTACATCAGATCAAAACATAAACTACAAAAAGTCAACAAACCCACGACTCTTCCAGTGCAAGACTTGCAACAAATGCTTCCCTTCATTCCAGTCACTCGGAGGACACAGAACCAGCCACAGGAAGCCCAAGCACAACAGCACTGTTGTAGAAGGAGTTACTACTTCTATTGGAGAGAATGATCCCACCACAAGCATCACTCTCTCCTTGAAAACACCAAATAGGGTTAACAATTTGACTAGCACCAGCACTGTCGACACCACAAAAGCAAGAGTTCACCGGTGTTCCACCTGTTGTGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCACAGAAATCTTGTGAACGCTTCTACAGCAACGTGTATGAGTGGTGATGGTGGTGGTAGCCAAGAATATCAAGGAGCTAACAGACCCTTGAATTTGGACCTGAATCTTCCAGCACCAGAGGAAGATCAAGGAGCATCCAAGTTTTCGTTTCAGCAAAGAGAAAACGTCATCGTGTTCTCTACTTCTTTGGTGAATTGCAATTACTGA 801 0.4619 MQTQEELQVLSKDQMMIKGKRNKRQRAPSPPRFAMPASTSTSTNNSIDSATTSTTTNTPIESIEEEDMVNCLILLAQGTHHVAAATSDQNINYKKSTNPRLFQCKTCNKCFPSFQSLGGHRTSHRKPKHNSTVVEGVTTSIGENDPTTSITLSLKTPNRVNNLTSTSTVDTTKARVHRCSTCCAEFSSGQALGGHMRRHRNLVNASTATCMSGDGGGSQEYQGANRPLNLDLNLPAPEEDQGASKFSFQQRENVIVFSTSLVNCNY* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01150 266 MobiDBLite consensus disorder prediction 34 56 - -
Lapu7g01150 266 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Lapu7g01150 266 SMART c2h2final6 177 199 IPR013087 -
Lapu7g01150 266 SMART c2h2final6 102 124 IPR013087 -
Lapu7g01150 266 Pfam C2H2-type zinc finger 102 127 - -
Lapu7g01150 266 Pfam C2H2-type zinc finger 176 200 - -
Lapu7g01150 266 PANTHER ZINC FINGER PROTEIN ZAT5 24 249 - -
Lapu7g01150 266 SUPERFAMILY beta-beta-alpha zinc fingers 100 199 IPR036236 -
Lapu7g01150 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Lapu7g01150 266 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Lapu7g01150 266 Gene3D Classic Zinc Finger 100 199 - -
Lapu7g01150 266 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01150 Lapu-Chr7 23806253 23807053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01150 15 266 C2H2 Transcription Factor Family AT5G03510 37.011 2.15e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g01150 zf-C2H2_6 4.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01150 - - pvu:PHAVU_007G151700g 425.631