Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01133 ATGCAGAAACGAAAAGCGGGGAGGAAGAAGTTCCATGAAACACGTCACCCCGTGTACAAAGGCGTCAGGCAGAGGAACGGGAAGTGGGTGTGCGAGTTACGACAACCTAATAACAAAAGCGCACGCGTCTGGCTCGGAACCTTCGCACGCCCCGACATGGCTGCTGTTGCCTACGACGTTGCCGCTTTGGCTTTCAAGGGCGACGGCGCTTCCTTGAACTTCCCCGACGCGATTTCCTCATTGCCGCGTCTCAACTCGAGTACGTCCTCTGTCAGGGCGATTCAGTTTGCCGCGACGCAGGCGGCGGAGAAGCACTTTTCTTGCGCTGAGTTTCAAAAGCTGAGGGACGATGTTTCTTCCGAGGGAGGCTCTGCAAGCTTCTCTTGGGATGAAGATTGTTCTGAGCTGTCGTCGGAAGAAGGTTCTAGAATGTTCTTTTGGGATGAGGAGGAGGTATTTAACATGCCAGAGTTATTGAACAGCATGGCGGAAGCATTGATCATTACACCGCCGGCTTTGCAGAAAGGGTTCAATTGGGTTGGTGGGGAAACCACAGTAGATTTGACTCTATGGTAA 576 0.5278 MQKRKAGRKKFHETRHPVYKGVRQRNGKWVCELRQPNNKSARVWLGTFARPDMAAVAYDVAALAFKGDGASLNFPDAISSLPRLNSSTSSVRAIQFAATQAAEKHFSCAEFQKLRDDVSSEGGSASFSWDEDCSELSSEEGSRMFFWDEEEVFNMPELLNSMAEALIITPPALQKGFNWVGGETTVDLTLW* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01133 191 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Lapu7g01133 191 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Lapu7g01133 191 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Lapu7g01133 191 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Lapu7g01133 191 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Lapu7g01133 191 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 191 IPR045277 GO:0003700
Lapu7g01133 191 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lapu7g01133 191 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Lapu7g01133 191 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01133 Lapu-Chr7 23082914 23083497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01133 3 191 AP2-EREBP Transcription Factor Family AT4G25470 42.932 5.96e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu7g01133 AP2 8.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01133 - - var:108324544 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01133 7 23082914 23083497 Lapu7g01133 7 23082914 23083497 ECH
Lapu6g00615 6 6406125 6406771 Lapu7g01133 7 23082914 23083497 PCT