Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01126 ATGGAGAATTCGCGTAGACCGTTCGATAGATCGCGAGAACCAGGTCCGAAGAAGCCCCGATTGATGGAAGAGTTGGATCGGGCTCCGAATTCGGGTGCGAGACAGTTTCCTCAACTACAAGTGATTTCCGGGGTTACGGCATTATCGTCTGCGAGGTTTCGAACAAATGAAAGAGACATTGAAAGCAGTGATTTTGGTCGCCGGGGTGGTGCTGGCGGTGGCGGTTATCAGCCACAGCCACTGCCATTTCAGGAGCTTGTTTCTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCGCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTCGCTGCCAAGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAATTGGGCTTCACTTCTGCAGTCAATGGTTCATCTTCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGACAATGTCTACAGCAGTCCACTGGTGATCAGCGTGCTCAAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACTGGTGCATCCTATGGAAGTGATGATTTTGTTTCCAAAATTGCAAGGGATATGGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACGGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGCAGGGTCCATGCCTGGACAAAGAAATGGTTTGAGTCTCAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGATGTTGGATTCACATCATCAACCCGCACACAACATAACTAGCACACGGAGTAGTGTGATCTCAAATAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCCGGCTTGACTGGTCATGGTACATCTATTGTTAGTGGCTTGAGCAAAAATGCTTGGACTGCTGATGACGATAATTTGGAAGTTGAAGATCGCCTCCAAGTCAGGAATCCTTTTGGGGAGCAGCACTCTATGGATGAGTTGGATAGGAAGGCTGGTCACTCTGGCAGATTTGTGTCTGCACTTGGTGCCATTCCGTCCAATACAAATACCTCCACTGCCAGGATGGGAAATAGGCCTTTACTGTCAAGTGCAACCATAGGATTACCAGGAATTGCAGGACCATTTCATTCTTTGGGAGCTGAAAACCCTTCAGGACAGTCACCTTTGCGACAGAGGTCTCCATCACCGCCAGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAATTGGGCACTTCTCACAATGAAGTTACTGTTAAGACTGAGAAGCCATCTGTGTCCAAAGTTCCTTTAGCCAGAGAATCTAAAAGTAGCATGAGTACAGGGACTCAATTAGGTGTTCGGCCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCACAATTGCATCACCATCTTCATTAGGTCCTTCCAGTGATAATTCATCTGCTCTCTCAAAAATACCTCAAAGAAAGGCTGGACAACCACCTAGGTTATCTACACTACCAACTGCTTCCTCTAATGTCAGCAGTGCCTCAGCTCAGACAAGTGATACCAACAATACCTTAAATCCAATTGCAAACCTGTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGACTCAACAACTAAGGTGCCCCATGAGTTGCTGACTCGATTGGAAGAAGAAATCGATAGCATTACCACCAGTAGCTCTTTGCCTGTTGCCTCAGTTTCTGGTTCTGCAGCTGTTCCAGTCCCTTCTATCAAAGACGAGGTAGATGACACTGCAAGAACGCCCATGTCCTTGTCTGAATCAACCAGCCCAGGAGTCGTAAATCTCATTGGCTTCGAGTTTAAGCACAATGTATTACGAGAATTCCATTCACCTGTAATTAATGAATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGGCTTAGATTCCAAAAGCAGTTCAATAGACACTTGGAGTGGCATGCCACAAGGGACCGAGAAGATAATGGTTTAACTAAGGTATCGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATATCTATCAGAGAATGAGGCTGATTCTGTAAATACAGATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTATGGTTTTGGCAGATGAAAACCAATGTTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATTTTTACTGTCAGGAAAGTGGTGGGTGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTGATAGCAACAGTGAGATGGGAGTTAGAGACATGAGTACTGGAAGGGGTCCCATCATTCATACAAATTGCTTATCAGATAACTTGATTTCCAGTGTCCCTGAGATGGTAAGATTTATTACTTGA 2676 0.4451 MENSRRPFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGVTALSSARFRTNERDIESSDFGRRGGAGGGGYQPQPLPFQELVSQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSSASATLRSDSQSQRPPHSIHVNPKYLERQCLQQSTGDQRAQRDAFNDSVPEKSTGASYGSDDFVSKIARDMGLGISRPGGRVTESGHDKGWYNKSGVAGSMPGQRNGLSLKYSFLNTEAPKSMMLDSHHQPAHNITSTRSSVISNSWKNSEEEEYTWDEMNSGLTGHGTSIVSGLSKNAWTADDDNLEVEDRLQVRNPFGEQHSMDELDRKAGHSGRFVSALGAIPSNTNTSTARMGNRPLLSSATIGLPGIAGPFHSLGAENPSGQSPLRQRSPSPPGPFSSMTFQARHQQQLGTSHNEVTVKTEKPSVSKVPLARESKSSMSTGTQLGVRPSRTGGPSPATLISSVSTIASPSSLGPSSDNSSALSKIPQRKAGQPPRLSTLPTASSNVSSASAQTSDTNNTLNPIANLLSSLVAKGLISAETDSTTKVPHELLTRLEEEIDSITTSSSLPVASVSGSAAVPVPSIKDEVDDTARTPMSLSESTSPGVVNLIGFEFKHNVLREFHSPVINELFDDLPHHCSICGFRLRFQKQFNRHLEWHATRDREDNGLTKVSRWYLKSSDWIVGKAEYLSENEADSVNTDGNEADRSQEDAMVLADENQCLCVLCGELFEDFYCQESGGWMFKGAVYFANSDSNSEMGVRDMSTGRGPIIHTNCLSDNLISSVPEMVRFIT* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01126 891 SMART 558neu5 85 207 IPR006569 -
Lapu7g01126 891 Pfam CID domain 91 200 IPR006569 -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 56 79 - -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 471 620 - -
Lapu7g01126 891 ProSitePatterns Zinc finger C2H2 type domain signature. 738 758 IPR013087 -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 1 27 - -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 493 522 - -
Lapu7g01126 891 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Lapu7g01126 891 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 1 36 - -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 217 276 - -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 531 587 - -
Lapu7g01126 891 CDD CID_Pcf11 87 199 IPR047415 -
Lapu7g01126 891 Gene3D - 82 207 IPR008942 -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 217 234 - -
Lapu7g01126 891 MobiDBLite consensus disorder prediction 243 276 - -
Lapu7g01126 891 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Lapu7g01126 891 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 877 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lapu7g01126 891 MobiDBLite consensus disorder prediction 595 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01126 Lapu-Chr7 22820236 22827959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01126 710 874 C2H2 Transcription Factor Family AT4G04885 34.524 5.28e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01126 K14400 - gmx:100807857 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01126 7 22820236 22827959 Lapu7g01126 7 22820236 22827959 ECH
Lapu6g00610 6 6344449 6350780 Lapu7g01126 7 22820236 22827959 PCT