Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01110 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCTCGACCAGAGTCTTCCTTCAGCTTCCTTTACAACTACAACTACACCCCATACCCAGAAATGGAAGTGAAGCAACAAAATCTAGCAGAGTCAAGTTCATCCATGGAGAAAATGAACTGCGGGAACCAGGAGAAGAAGAAGAGATTAACAAGTGACCAGTTAGACTCGTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTAGACCCTGATAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTTCAACCTCGTCAAATTGCCGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAAAAGCAGAAGCTAGAGGATGAGGTAATGAAGTTGAAGGGTATGCTGAGAGAGCAAGTTTCTAGAACCCAAGTGTCAACAGGTTACACAGAAATCTCTGGAGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGAGAACACTGCAGCAGCAGCAGCAGCATCAGAATATTGGAGAAGGAAACTGTTCTTTCACTTTGGAAGATTACAACACAGTTCCAGTACTACCCTACTGGCCTGGGGTCCCTTACTATCCCTAA 660 0.4455 MEWNGSTRRYVPRPESSFSFLYNYNYTPYPEMEVKQQNLAESSSSMEKMNCGNQEKKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEDEVMKLKGMLREQVSRTQVSTGYTEISGEETVESTSEALRCSKRRTLQQQQQHQNIGEGNCSFTLEDYNTVPVLPYWPGVPYYP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01110 219 CDD homeodomain 56 112 IPR001356 GO:0003677
Lapu7g01110 219 Gene3D - 47 115 - -
Lapu7g01110 219 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Lapu7g01110 219 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Lapu7g01110 219 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Lapu7g01110 219 FunFam Putative homeobox-leucine zipper protein ATHB-51 53 116 - -
Lapu7g01110 219 SUPERFAMILY Homeodomain-like 45 113 IPR009057 -
Lapu7g01110 219 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Lapu7g01110 219 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Lapu7g01110 219 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Lapu7g01110 219 SMART HOX_1 54 115 IPR001356 GO:0003677
Lapu7g01110 219 MobiDBLite consensus disorder prediction 37 64 - -
Lapu7g01110 219 Coils Coil 103 151 - -
Lapu7g01110 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 185 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01110 Lapu-Chr7 22290248 22291996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01110 1 141 Homeobox Transcription Factor Family AT5G03790 52.121 4.57e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu7g01110 Homeodomain 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01110 - - gmx:100778007 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01110 7 22290248 22291996 Lapu7g01110 7 22290248 22291996 ECH
Lapu7g01110 7 22290248 22291996 Lapu6g00588 6 6113536 6115239 PCT