Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01098 ATGGCTGTTCCTGCGACGGTCGCCGCCGCCTCGCCGGCTTCGCTTTACGTAGGAGACCTTCATCCTGACATCACCGATGCCCAACTCTACCAGGCTTTCTCGGAATTCGAAAATCTCACTTCCGTTCGCGTATGCAGAGACTCCATGACGAAGATTTCGCTCCGTTATGGTTACGTCAACTTCGTGTCTCAGCAAGACGCAATTCGTGCAATCAAGGTGAAAAACAATTCTTATCTTTTTGGAAAAGTGATAAGGGTCATGTGGTCACATCGGGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTATTTGTTAAGAACTTAGCAGAATCTTTAGATAATGCGGGACTATATGATTTATTTCAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCGTGTATGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAATGCCATAGAGAAGCTGAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCAATGATTCCAAGTATACAAATTTGTACATTAAAAACTTGGACTCAAATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAATAATTAGCTTGGCTATTGCAAAGGATGACAAGGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAATCCAGACGATGCTAGAAAGGCGATGGAAGCAATGAATGGATTGCAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAGAAGAAGGCTGAACGTGAGCAAATCTTGCATCATCAATTTGAGGAAAAACGCAAGGAGCAAATATTGAAGTCAAAGGGCTCTAACCTTTATGTGAAGAACATTGATGACGGTGTTAGTGAAAAAGAATTACAAGATCTGTTTAGTTCATGTGGCACAATAACTTCTGTGAAAGTTATGCGAAATGACAAAGGGATAAGCAAGGGATTTGGTTTTGTCTGCTTCGCCAACCCTGAGGAGGCTAATAAAGCTGTGAGCACTTTTTATGGATGCATGTTCCACCGTAAGCCACTGTATATTGCTATCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCCACTATACAACGCAACAAGCAGGATTGGATGGACCTTCAACTGCAGTTATCCCTGGTGGCTTTCCACCTTACTTCTATCCAAATGTTACTTCACAGATGCTTCAATCTGGGCTTTTGTATCAACCTCTGGGTTTAGGATCAGGATGGAGGGCTAATGACTTTACGCCTGTCACTAGATCATTTCAACAATCACAGGTTCCTATTGTTCCTAACACTACTAGGCATCAAAGGCAAAATAGGGGCAGGATGAATGGGCATATGAATTCAGTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAACTGCAACCCTATTATCAGCCAATGGACTCAAGCGTCGAGTACTTGACAGCCTAG 1503 0.4251 MAVPATVAAASPASLYVGDLHPDITDAQLYQAFSEFENLTSVRVCRDSMTKISLRYGYVNFVSQQDAIRAIKVKNNSYLFGKVIRVMWSHRDPNARKSGRGNVFVKNLAESLDNAGLYDLFQKYGNILSSKVVVYEDGKSKGYGFVQFESEESANNAIEKLNGSTVRDKQIYVGKFVRKGDRILPGNDSKYTNLYIKNLDSNITEALLQEKFSSFGKIISLAIAKDDKGLSKGFAFVNYDNPDDARKAMEAMNGLQFGSKNLYVARAQKKAEREQILHHQFEEKRKEQILKSKGSNLYVKNIDDGVSEKELQDLFSSCGTITSVKVMRNDKGISKGFGFVCFANPEEANKAVSTFYGCMFHRKPLYIAIAQRKEDRKTQLKLHYTTQQAGLDGPSTAVIPGGFPPYFYPNVTSQMLQSGLLYQPLGLGSGWRANDFTPVTRSFQQSQVPIVPNTTRHQRQNRGRMNGHMNSVGKAHSGVYIPQLQPYYQPMDSSVEYLTA* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01098 500 PANTHER RNA BINDING PROTEIN 13 77 - -
Lapu7g01098 500 Gene3D - 5 102 IPR012677 -
Lapu7g01098 500 FunFam Polyadenylate-binding protein 98 182 - -
Lapu7g01098 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Lapu7g01098 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Lapu7g01098 500 Gene3D - 182 277 IPR012677 -
Lapu7g01098 500 Gene3D - 278 383 IPR012677 -
Lapu7g01098 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Lapu7g01098 500 SMART rrm2_1 296 368 IPR003954 GO:0003676
Lapu7g01098 500 SMART rrm2_1 193 265 IPR003954 GO:0003676
Lapu7g01098 500 SMART rrm2_1 102 174 IPR003954 GO:0003676
Lapu7g01098 500 SUPERFAMILY RNA-binding domain, RBD 183 276 IPR035979 GO:0003676
Lapu7g01098 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Lapu7g01098 500 FunFam Polyadenylate-binding protein 183 277 - -
Lapu7g01098 500 FunFam Poly(A) binding protein cytoplasmic 1 like 287 376 - -
Lapu7g01098 500 Coils Coil 264 284 - -
Lapu7g01098 500 SUPERFAMILY RNA-binding domain, RBD 292 380 IPR035979 GO:0003676
Lapu7g01098 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Lapu7g01098 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Lapu7g01098 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Lapu7g01098 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Lapu7g01098 500 CDD RRM4_I_PABPs 294 372 - -
Lapu7g01098 500 Gene3D - 103 181 IPR012677 -
Lapu7g01098 500 FunFam Polyadenylate-binding protein 4 97 - -
Lapu7g01098 500 SMART rrm1_1 193 265 IPR000504 GO:0003723
Lapu7g01098 500 SMART rrm1_1 102 174 IPR000504 GO:0003723
Lapu7g01098 500 SMART rrm1_1 296 368 IPR000504 GO:0003723
Lapu7g01098 500 SMART rrm1_1 14 87 IPR000504 GO:0003723
Lapu7g01098 500 SUPERFAMILY RNA-binding domain, RBD 13 180 IPR035979 GO:0003676
Lapu7g01098 500 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 13 466 IPR006515 GO:0003723
Lapu7g01098 500 CDD RRM2_I_PABPs 99 175 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01098 Lapu-Chr7 22087459 22091163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01098 13 462 Eukaryotic Initiation Factors Gene Family AT2G36660 56.484 1.07e-179 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01098 K13126 - gmx:100798828 796.964